View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21489_low_2 (Length: 387)

Name: NF21489_low_2
Description: NF21489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21489_low_2
NF21489_low_2
[»] chr7 (12 HSPs)
chr7 (205-369)||(30415140-30415304)
chr7 (49-93)||(17166865-17166909)
chr7 (50-89)||(36358426-36358465)
chr7 (49-95)||(26873700-26873746)
chr7 (49-95)||(46027677-46027723)
chr7 (50-95)||(19692465-19692510)
chr7 (49-86)||(41367666-41367703)
chr7 (49-89)||(44724178-44724218)
chr7 (56-89)||(36675609-36675642)
chr7 (61-93)||(9013815-9013847)
chr7 (49-93)||(29502247-29502291)
chr7 (49-89)||(45350055-45350094)
[»] chr2 (12 HSPs)
chr2 (49-89)||(44545844-44545884)
chr2 (51-94)||(1115155-1115198)
chr2 (48-89)||(28745608-28745649)
chr2 (49-89)||(6750121-6750161)
chr2 (49-89)||(34983279-34983319)
chr2 (49-89)||(36436297-36436337)
chr2 (49-89)||(38527177-38527217)
chr2 (56-89)||(1021192-1021225)
chr2 (49-94)||(22674855-22674900)
chr2 (48-89)||(23869666-23869707)
chr2 (57-89)||(2249584-2249616)
chr2 (49-89)||(38763717-38763757)
[»] chr1 (13 HSPs)
chr1 (49-89)||(46224875-46224915)
chr1 (49-95)||(42371967-42372013)
chr1 (49-94)||(8530081-8530126)
chr1 (49-89)||(6849756-6849796)
chr1 (49-89)||(16693063-16693103)
chr1 (49-89)||(17285408-17285448)
chr1 (49-89)||(33012171-33012211)
chr1 (56-89)||(29981828-29981861)
chr1 (56-89)||(43532479-43532512)
chr1 (56-89)||(44052580-44052613)
chr1 (49-89)||(29169945-29169985)
chr1 (49-89)||(37125696-37125736)
chr1 (49-89)||(47561730-47561770)
[»] chr4 (16 HSPs)
chr4 (49-94)||(44134492-44134537)
chr4 (49-95)||(44817664-44817710)
chr4 (48-89)||(31581864-31581905)
chr4 (49-94)||(51001474-51001519)
chr4 (49-89)||(2655025-2655065)
chr4 (49-89)||(6755832-6755872)
chr4 (49-89)||(31664278-31664318)
chr4 (49-89)||(36584427-36584467)
chr4 (49-89)||(40228546-40228586)
chr4 (51-89)||(18491190-18491228)
chr4 (51-89)||(19653761-19653799)
chr4 (56-89)||(11651088-11651121)
chr4 (56-89)||(13869146-13869179)
chr4 (49-94)||(16925105-16925149)
chr4 (49-89)||(27270357-27270397)
chr4 (49-89)||(38141673-38141713)
[»] chr5 (14 HSPs)
chr5 (56-95)||(30772876-30772915)
chr5 (49-89)||(3631262-3631302)
chr5 (49-89)||(9737821-9737861)
chr5 (49-89)||(13013369-13013409)
chr5 (49-89)||(26525344-26525384)
chr5 (50-89)||(8074355-8074394)
chr5 (50-93)||(29390268-29390311)
chr5 (56-89)||(16823134-16823167)
chr5 (56-89)||(25701542-25701575)
chr5 (49-93)||(9596280-9596324)
chr5 (49-89)||(26297123-26297163)
chr5 (49-89)||(28662120-28662160)
chr5 (49-89)||(43348637-43348677)
chr5 (49-89)||(43358413-43358453)
[»] scaffold0131 (1 HSPs)
scaffold0131 (49-94)||(11165-11210)
[»] chr3 (13 HSPs)
chr3 (49-94)||(29126159-29126204)
chr3 (49-89)||(18163721-18163761)
chr3 (49-89)||(50527749-50527789)
chr3 (49-89)||(52571540-52571580)
chr3 (50-89)||(28952508-28952547)
chr3 (56-89)||(2618888-2618921)
chr3 (49-89)||(7160406-7160446)
chr3 (56-88)||(7441705-7441737)
chr3 (49-85)||(16908924-16908960)
chr3 (57-89)||(21259558-21259590)
chr3 (49-89)||(22729223-22729263)
chr3 (57-89)||(36633490-36633522)
chr3 (49-89)||(52201985-52202025)
[»] scaffold0050 (1 HSPs)
scaffold0050 (49-89)||(19049-19089)
[»] scaffold0014 (1 HSPs)
scaffold0014 (49-89)||(64937-64977)
[»] chr8 (9 HSPs)
chr8 (49-89)||(9830611-9830651)
chr8 (49-89)||(34934371-34934411)
chr8 (56-95)||(7012335-7012374)
chr8 (56-89)||(1183826-1183859)
chr8 (56-89)||(24797176-24797209)
chr8 (56-89)||(41838077-41838110)
chr8 (49-89)||(3886896-3886936)
chr8 (49-89)||(5590289-5590329)
chr8 (49-89)||(6316880-6316920)
[»] chr6 (5 HSPs)
chr6 (57-89)||(13405486-13405518)
chr6 (58-89)||(2399429-2399460)
chr6 (58-89)||(12996288-12996319)
chr6 (56-94)||(12698492-12698530)
chr6 (49-89)||(24130354-24130394)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 205 - 369
Target Start/End: Original strand, 30415140 - 30415304
Alignment:
Q  205 ctcttaaatcaacgtgtgagatgttaactttacttaacatagatacaggaacagcttagacacaaacttctaattgaccattgatcatattattatacaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30415140 ctcttaaatcaacgtgtgagatgttaactttacttaacatagatacaggaacagcttagacacaaacttctaattgaccattgatcatattattatacaa 30415239  T
Q  305 ttaaaaaagtatactccaaaagcaatttatcaaccattttcaaagcaactaaaatatacccttta 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30415240 ttaaaaaagtatactccaaaagcaatttatcaaccattttcaaagcaactaaaatatacccttta 30415304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 17166909 - 17166865
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctg 93  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  17166909 gggtgggccgtggcccaccccagcccatgaagggctccgccgctg 17166865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 36358426 - 36358465
Alignment:
Q  50 ggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  36358426 ggtggaccgtggcccaccccagcccatgaagggctccgcc 36358465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 26873746 - 26873700
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    |||||| ||||||||||||||| |||||||||||||||||| |||||    
T  26873746 gggtgggccgtggcccaccccagcccatgaagggctccgccactgta 26873700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 46027723 - 46027677
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||||    
T  46027723 gggtggaccgtggcccaccccagcccacgaagggctccgccactgta 46027677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 19692510 - 19692465
Alignment:
Q  50 ggtggaccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    |||||||||||| |||||||| |||||||||||||||||| |||||    
T  19692510 ggtggaccgtggtccaccccagcccatgaagggctccgccactgta 19692465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 41367703 - 41367666
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctcc 86  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41367703 gggtgaaccgtggcccaccccaacccatgaagggctcc 41367666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 44724178 - 44724218
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  44724178 gggtgggccgtggcccaccccagcccatgaagggctccgcc 44724218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 36675609 - 36675642
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  36675609 ccgtggcccaccccagcccatgaagggctccgcc 36675642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 9013847 - 9013815
Alignment:
Q  61 gcccaccccaacccatgaagggctccgccgctg 93  Q
    |||||||||| ||||||||||||||||||||||    
T  9013847 gcccaccccagcccatgaagggctccgccgctg 9013815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 29502247 - 29502291
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctg 93  Q
    |||||| | ||||||||||| | ||||||||||||||||||||||    
T  29502247 gggtgggctgtggcccaccctagcccatgaagggctccgccgctg 29502291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 45350094 - 45350055
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  45350094 gggtggaccgtggccca-cccagcccatgaagggctccgcc 45350055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 44545844 - 44545884
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44545844 gggtggaccgtggcccaccccaacccatgaagggctccgcc 44545884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 1115155 - 1115198
Alignment:
Q  51 gtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  1115155 gtggaccgtggcccaccccagcccatgaagggctccgccactgt 1115198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 28745608 - 28745649
Alignment:
Q  48 ggggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  28745608 ggggtgggccgtggcccaccccagcccatgaagggctccgcc 28745649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 6750121 - 6750161
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  6750121 gggtgggccgtggcccaccccagcccatgaagggctccgcc 6750161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 34983319 - 34983279
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  34983319 gggtgggccgtggcccaccccagcccatgaagggctccgcc 34983279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 36436297 - 36436337
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  36436297 gggtgggccgtggcccaccccagcccatgaagggctccgcc 36436337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 38527217 - 38527177
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  38527217 gggtgggccgtggcccaccccagcccatgaagggctccgcc 38527177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 1021192 - 1021225
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  1021192 ccgtggcccaccccagcccatgaagggctccgcc 1021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 22674855 - 22674900
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||| |||||| |||||||| |||||||||||||||||| ||||    
T  22674855 gggtgggccgtggtccaccccagcccatgaagggctccgccactgt 22674900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 23869707 - 23869666
Alignment:
Q  48 ggggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||| ||||||||||||||| |||||| |||||||||||    
T  23869707 ggggtgggccgtggcccaccccagcccatggagggctccgcc 23869666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 2249616 - 2249584
Alignment:
Q  57 cgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||||| ||||||||||||||||||    
T  2249616 cgtggcccaccccagcccatgaagggctccgcc 2249584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 38763757 - 38763717
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  38763757 gggtgggccgtggcccacctcagcccatgaagggctccgcc 38763717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 46224875 - 46224915
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46224875 gggtggaccgtggcccaccccaacccatgaagggctccgcc 46224915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 42372013 - 42371967
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||||    
T  42372013 gggtgggccgtggcccaccccaatccatgaagggctccgccactgta 42371967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 8530126 - 8530081
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||    
T  8530126 gggtgggccgtggcccaccccagcccatgaagggctccgccactgt 8530081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 6849796 - 6849756
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  6849796 gggtgggccgtggcccaccccagcccatgaagggctccgcc 6849756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 16693063 - 16693103
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  16693063 gggtgggccgtggcccaccccagcccatgaagggctccgcc 16693103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 17285408 - 17285448
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  17285408 gggtgggccgtggcccaccccagcccatgaagggctccgcc 17285448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 33012171 - 33012211
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  33012171 gggtgggccgtggcccaccccagcccatgaagggctccgcc 33012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 29981828 - 29981861
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  29981828 ccgtggcccaccccagcccatgaagggctccgcc 29981861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 43532479 - 43532512
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||||||||||||| |||||||||||    
T  43532479 ccgtggcccaccccaacccatggagggctccgcc 43532512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 44052580 - 44052613
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  44052580 ccgtggcccaccccagcccatgaagggctccgcc 44052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 29169985 - 29169945
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| | ||||||||||||| ||||||||||||||||||    
T  29169985 gggtgggctgtggcccaccccagcccatgaagggctccgcc 29169945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 37125736 - 37125696
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  37125736 gggtgggccgtggcccacctcagcccatgaagggctccgcc 37125696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 47561770 - 47561730
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||| |||| |||||||||||||||    
T  47561770 gggtgggccgtggcccacccaaacctatgaagggctccgcc 47561730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 44134537 - 44134492
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||    
T  44134537 gggtggaccgtggcccaccccagcccatgaagggctccgccactgt 44134492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 44817664 - 44817710
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    |||||| ||||||||||||||| |||||||||||||||||| |||||    
T  44817664 gggtgggccgtggcccaccccagcccatgaagggctccgccactgta 44817710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 31581864 - 31581905
Alignment:
Q  48 ggggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  31581864 ggggtggaccgtggcccaccccagcccatgaagggcttcgcc 31581905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 51001519 - 51001474
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||    
T  51001519 gggtgggccgtggcccaccccagcccatgaagggctccgccactgt 51001474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 2655025 - 2655065
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  2655025 gggtgggccgtggcccaccccagcccatgaagggctccgcc 2655065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 6755872 - 6755832
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  6755872 gggtgggccgtggcccaccccagcccatgaagggctccgcc 6755832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 31664278 - 31664318
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  31664278 gggtgggccgtggcccaccccatcccatgaagggctccgcc 31664318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 36584467 - 36584427
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  36584467 gggtgggccgtggcccaccccagcccatgaagggctccgcc 36584427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 40228546 - 40228586
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  40228546 gggtgggccgtggcccaccccagcccatgaagggctccgcc 40228586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 18491228 - 18491190
Alignment:
Q  51 gtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  18491228 gtgggccgtggcccaccccagcccatgaagggctccgcc 18491190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 19653761 - 19653799
Alignment:
Q  51 gtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  19653761 gtgggccgtggcccaccccagcccatgaagggctccgcc 19653799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 11651088 - 11651121
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  11651088 ccgtggcccaccccagcccatgaagggctccgcc 11651121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 13869179 - 13869146
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||| ||||||||||||||||||||    
T  13869179 ccgtggcccaccctaacccatgaagggctccgcc 13869146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 16925149 - 16925105
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||    
T  16925149 gggtggaccgtggcccacccc-gcccatgaagggctccgccactgt 16925105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 27270397 - 27270357
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| | ||||||||||||| ||||||||||||||||||    
T  27270397 gggtgggctgtggcccaccccagcccatgaagggctccgcc 27270357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 38141673 - 38141713
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||| ||||| ||||||||||||||||||    
T  38141673 gggtgggccgtggccctccccagcccatgaagggctccgcc 38141713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 30772915 - 30772876
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30772915 ccgtggcccaccccaacccatgaagggctccgccactgta 30772876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 3631302 - 3631262
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  3631302 gggtgggccgtggcccaccccagcccatgaagggctccgcc 3631262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 9737821 - 9737861
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  9737821 gggtgggccgtggcccaccccagcccatgaagggctccgcc 9737861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 13013369 - 13013409
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  13013369 gggtgggccgtggcccaccccagcccatgaagggctccgcc 13013409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 26525344 - 26525384
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  26525344 gggtgggccgtggcccaccccagcccatgaagggctccgcc 26525384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 8074355 - 8074394
Alignment:
Q  50 ggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  8074355 ggtgggccgtggcccaccccagcccatgaagggctccgcc 8074394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 29390311 - 29390268
Alignment:
Q  50 ggtggaccgtggcccaccccaacccatgaagggctccgccgctg 93  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||    
T  29390311 ggtgggccgtggcccaccccagcccatgaagggctccgctgctg 29390268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 16823167 - 16823134
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  16823167 ccgtggcccaccccagcccatgaagggctccgcc 16823134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 25701542 - 25701575
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  25701542 ccgtggcccaccccagcccatgaagggctccgcc 25701575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 9596280 - 9596324
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctg 93  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||    
T  9596280 gggtgggccgtggcccaccccagcctttgaagggctccgccgctg 9596324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 26297123 - 26297163
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||||| |||| | ||||||||||||||||    
T  26297123 gggtggaccgtggcccatcccagctcatgaagggctccgcc 26297163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 28662160 - 28662120
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||| ||||||||||||    
T  28662160 gggtgggccgtggcccaccccagcccataaagggctccgcc 28662120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 43348677 - 43348637
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||| ||||| ||||||||||||||||||    
T  43348677 gggtgggccgtggcccgccccagcccatgaagggctccgcc 43348637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 43358453 - 43358413
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  43358453 gggtgggccgtggcccacctcagcccatgaagggctccgcc 43358413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 11210 - 11165
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||    
T  11210 gggtgggccgtggcccaccccagcccatgaagggctccgccactgt 11165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 29126159 - 29126204
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||    
T  29126159 gggtgggccgtggcccaccccagcccatgaagggctccgccactgt 29126204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 18163761 - 18163721
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  18163761 gggtgggccgtggcccaccccagcccatgaagggctccgcc 18163721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 50527749 - 50527789
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  50527749 gggtgggccgtggcccaccccagcccatgaagggctccgcc 50527789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 52571540 - 52571580
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  52571540 gggtgggccgtggcccaccccagcccatgaagggctccgcc 52571580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 28952508 - 28952547
Alignment:
Q  50 ggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  28952508 ggtggatcgtggcccaccccagcccatgaagggctccgcc 28952547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 2618921 - 2618888
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||| |||||||||||||||||||||    
T  2618921 ccgtggcccacctcaacccatgaagggctccgcc 2618888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 7160406 - 7160446
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| |||||||| |||||||||    
T  7160406 gggtgggccgtggcccaccccagcccatgaaaggctccgcc 7160446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 7441705 - 7441737
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgc 88  Q
    ||||||||||||||| |||||||||||||||||    
T  7441705 ccgtggcccaccccagcccatgaagggctccgc 7441737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 16908924 - 16908960
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctc 85  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  16908924 gggtgggccgtggcccaccccagcccatgaagggctc 16908960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 21259558 - 21259590
Alignment:
Q  57 cgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||| ||||||||||||||||||||||    
T  21259558 cgtggcccactccaacccatgaagggctccgcc 21259590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 22729263 - 22729223
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||| ||||||||||||    
T  22729263 gggtgggccgtggcccaccccagcccattaagggctccgcc 22729223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 36633522 - 36633490
Alignment:
Q  57 cgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||||| ||||||||||||||||||    
T  36633522 cgtggcccaccccagcccatgaagggctccgcc 36633490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 52202025 - 52201985
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||| ||||||||| ||||||||||||||||||    
T  52202025 gggtgggccgtgacccaccccagcccatgaagggctccgcc 52201985  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 19089 - 19049
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  19089 gggtgggccgtggcccaccccagcccatgaagggctccgcc 19049  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 64977 - 64937
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  64977 gggtgggccgtggcccaccccagcccatgaagggctccgcc 64937  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 9830651 - 9830611
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  9830651 gggtgggccgtggcccaccccagcccatgaagggctccgcc 9830611  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 34934371 - 34934411
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  34934371 gggtgggccgtggcccaccccagcccatgaagggctccgcc 34934411  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 7012374 - 7012335
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgccgctgta 95  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  7012374 ccgtggcccaccccagcccatgaagggctccgccactgta 7012335  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 1183859 - 1183826
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  1183859 ccgtggcccaccccagcccatgaagggctccgcc 1183826  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 24797176 - 24797209
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  24797176 ccgtggcccaccccagcccatgaagggctccgcc 24797209  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 41838077 - 41838110
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||| ||||||||||||||||||    
T  41838077 ccgtggcccaccccagcccatgaagggctccgcc 41838110  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 3886896 - 3886936
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||| ||||||||| |||||| ||||||||||||||||||    
T  3886896 gggtgaaccgtggcctaccccagcccatgaagggctccgcc 3886936  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 5590289 - 5590329
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| ||||| ||||||||||||    
T  5590289 gggtgggccgtggcccaccccagcccattaagggctccgcc 5590329  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 6316920 - 6316880
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| ||||||||||||||| |||||||| |||||||||    
T  6316920 gggtgggccgtggcccaccccagcccatgaaaggctccgcc 6316880  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 13405486 - 13405518
Alignment:
Q  57 cgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||||||||||||||||||||||||||||||    
T  13405486 cgtggcccaccccaacccatgaagggctccgcc 13405518  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 2399429 - 2399460
Alignment:
Q  58 gtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||||||||||||||||||||    
T  2399429 gtggcccaccccaacccatgaagggctccgcc 2399460  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 89
Target Start/End: Complemental strand, 12996319 - 12996288
Alignment:
Q  58 gtggcccaccccaacccatgaagggctccgcc 89  Q
    ||||||||||||||||||||||||||||||||    
T  12996319 gtggcccaccccaacccatgaagggctccgcc 12996288  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 12698530 - 12698492
Alignment:
Q  56 ccgtggcccaccccaacccatgaagggctccgccgctgt 94  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  12698530 ccgtggcccaccccagcccatgaagggctccgccactgt 12698492  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 24130354 - 24130394
Alignment:
Q  49 gggtggaccgtggcccaccccaacccatgaagggctccgcc 89  Q
    |||||| | ||||||||||||| ||||||||||||||||||    
T  24130354 gggtgggcagtggcccaccccagcccatgaagggctccgcc 24130394  T

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