View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21489_low_4 (Length: 307)

Name: NF21489_low_4
Description: NF21489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21489_low_4
NF21489_low_4
[»] chr7 (1 HSPs)
chr7 (22-307)||(37716767-37717056)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 37717056 - 37716767
Alignment:
Q  22 tgaccaagtttgtggatgatggttcacattgataatgatggagcttcctggacaataaaagacgaaattttaacatacactcttctactatatgttatag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37717056 tgaccaagtttgtggatgatggttcacattgataatgatggagcttcctggacaataaaagacgaaattttaacatacactcttctactatatgttatag 37716957  T
Q  122 ctattgatgcattttgatgttaggatgatacaatacatcatggagatattggtcaca---cttactannnnnnnnnngcaaagaatcacacttttcttag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||           |||||||||||||||||||||||    
T  37716956 ctattgatgcattttgatgttaggatgatacaatacatcatggagatattggtcacacttcttactttttttttttggcaaagaatcacacttttcttag 37716857  T
Q  219 tctttttgtaaaatgctggtctaggatttctaatagttatctttgacacttggtttcctaagcaattttgtttgaatc-agccatacttc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37716856 tctttttgtaaaatgctggtctaggatttctaatagttatctttgacacttggtttcctaagcaattttgtttgaatcaagccatacttc 37716767  T

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