View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21489_low_6 (Length: 272)
Name: NF21489_low_6
Description: NF21489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21489_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 46345325 - 46345554
Alignment:
| Q |
25 |
atatgcacccttaaattttgtttcctacaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatatacacagaaggg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46345325 |
atatgcacccttaaattttgtttcctacaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatatacacagaaggg |
46345424 |
T |
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| Q |
125 |
atgttgttaaattggttaactctaggcctgctagaaatggtgctggtaatggagctagacatgatagattgataagatgaaacagccattgataacaagt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46345425 |
atgttgttaaattggttaactctaggcctgctagaaatgatgctagtaatggagctagacatgatagattgataagatgaaacagccattgataacaagt |
46345524 |
T |
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| Q |
225 |
tcttaatgttacaacaacaaaagtgtgtttt |
255 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
46345525 |
tcttaatgttacaacaac-aaagtgtgtttt |
46345554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 46451342 - 46451114
Alignment:
| Q |
25 |
atatgcacccttaaattttgtttcctacaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatatacacagaaggg |
124 |
Q |
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||||||| |||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451342 |
atatgcaaccttaaattt-gttttcaaaaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatatacacagaaggg |
46451244 |
T |
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| Q |
125 |
atgttgttaaattggttaactctaggcctgctagaaatggtgctggtaatggagctagacatgatagattgataagatgaaacagccattgataacaagt |
224 |
Q |
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| T |
46451243 |
atgttgttaaattggttaactctaggcctgctagaaatggtgctggtaatggagctagacatgatagattgataagatgaaacagccattgataacaagt |
46451144 |
T |
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| Q |
225 |
tcttaatgttacaacaacaaaagtgtgtttt |
255 |
Q |
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| T |
46451143 |
tcttaatgttacaacaac-aaagtgtgtttt |
46451114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 46470862 - 46470680
Alignment:
| Q |
56 |
attacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatatacacagaagggatgttgttaaattggttaactctaggcctgc |
155 |
Q |
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|||||||||||||| || |||||||| | ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46470862 |
attacctcagccatagatcgaactttcaagctagcattccttttaaagctaggcatatacacagaagggatgttgttaaattggttaactctaggcctgc |
46470763 |
T |
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| Q |
156 |
tagaaatggtgctggtaatggagctagacatgatagattgataagatgaaacagccattgataacaagttcttaatgttacaa |
238 |
Q |
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| T |
46470762 |
tagaaatgctgcttgtaatggagctagacatgatagattgataagatgaaacagccattgataacaagttcttaatgttacaa |
46470680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 46462298 - 46462097
Alignment:
| Q |
16 |
atactaaatatatgcacccttaaa-ttttgtttcctacaacattacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatata |
114 |
Q |
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|||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||| || |
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| T |
46462298 |
atactaaatatatgcaaccttaaaattttgttttctaaaacattacctcagccatggatcgaactttgaagctagcattccttctaaagctaggcatgta |
46462199 |
T |
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| Q |
115 |
cacagaagggatgttgttaaattggttaactctaggcctgctagaaatggtgctggtaatggagctagacatgatagattgataagatgaaacagccatt |
214 |
Q |
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||||||||||||||| | | |||||||||||||| |||||||||||||| |||| || ||||| |||||||||||||| |||||||| ||||||||| |
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| T |
46462198 |
cacagaagggatgttactgatttggttaactctagacctgctagaaatgg---tggtcattgagcttgacatgatagattggtaagatgatacagccatt |
46462102 |
T |
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| Q |
215 |
gataa |
219 |
Q |
| |
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||||| |
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| T |
46462101 |
gataa |
46462097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 46465664 - 46465514
Alignment:
| Q |
56 |
attacctcagccatggaccgaactttgaggctagcatttcttctgaagctaggcatatacacagaagggatgttgttaaattggttaactctaggcctgc |
155 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
46465664 |
attacctcagccatggaccgaactttgaggttagcatttcttctgaagctaggcatatacacagaagggatgttgttaagtcgggtaactctaggcc--- |
46465568 |
T |
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| Q |
156 |
tagaaatggtgctggtaatggagctagacatgatagattgataagatgaaacagccattgata |
218 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
46465567 |
---------tgctggtcatggagcttgacatgatagattgataagatgatacagccattgata |
46465514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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