View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2148_high_3 (Length: 476)

Name: NF2148_high_3
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2148_high_3
NF2148_high_3
[»] chr4 (22 HSPs)
chr4 (58-460)||(31930807-31931209)
chr4 (59-275)||(42420447-42420662)
chr4 (59-226)||(18411935-18412102)
chr4 (59-227)||(13850209-13850377)
chr4 (59-227)||(24606077-24606245)
chr4 (59-223)||(13865740-13865904)
chr4 (59-204)||(31825571-31825716)
chr4 (59-227)||(14331417-14331584)
chr4 (59-167)||(31825325-31825433)
chr4 (73-167)||(17210670-17210764)
chr4 (59-201)||(27759001-27759143)
chr4 (73-227)||(31323658-31323811)
chr4 (73-204)||(21710904-21711035)
chr4 (59-227)||(20779650-20779826)
chr4 (59-162)||(32938577-32938680)
chr4 (72-167)||(49063366-49063461)
chr4 (59-136)||(20759714-20759792)
chr4 (59-136)||(20766105-20766183)
chr4 (59-155)||(44099879-44099975)
chr4 (59-191)||(23125248-23125381)
chr4 (86-167)||(39039485-39039566)
chr4 (61-166)||(12587152-12587257)
[»] chr1 (20 HSPs)
chr1 (59-295)||(21760952-21761185)
chr1 (61-229)||(25804143-25804311)
chr1 (69-369)||(15470879-15471180)
chr1 (59-230)||(48707493-48707663)
chr1 (59-232)||(48569126-48569300)
chr1 (59-220)||(5764535-5764696)
chr1 (59-167)||(49599571-49599679)
chr1 (59-167)||(21485348-21485456)
chr1 (59-270)||(26088763-26088969)
chr1 (59-175)||(34335718-34335834)
chr1 (59-167)||(41875600-41875708)
chr1 (59-167)||(3658044-3658152)
chr1 (59-210)||(27259405-27259556)
chr1 (72-167)||(39224935-39225030)
chr1 (59-220)||(18169358-18169518)
chr1 (59-167)||(18841834-18841943)
chr1 (59-232)||(46182265-46182441)
chr1 (59-167)||(27799142-27799249)
chr1 (60-210)||(12025654-12025803)
chr1 (179-227)||(6086564-6086612)
[»] chr5 (16 HSPs)
chr5 (59-226)||(28717537-28717706)
chr5 (59-275)||(10975232-10975446)
chr5 (59-227)||(2598678-2598846)
chr5 (61-196)||(25361172-25361307)
chr5 (59-224)||(15798668-15798834)
chr5 (59-227)||(4113804-4113973)
chr5 (59-227)||(12804890-12805058)
chr5 (59-204)||(7081640-7081784)
chr5 (65-196)||(23229324-23229456)
chr5 (59-227)||(12742075-12742239)
chr5 (73-204)||(33369991-33370122)
chr5 (59-162)||(36317622-36317728)
chr5 (59-210)||(16418677-16418827)
chr5 (59-161)||(17196056-17196159)
chr5 (94-167)||(22858335-22858408)
chr5 (59-151)||(19747600-19747685)
[»] chr7 (16 HSPs)
chr7 (59-219)||(27318413-27318573)
chr7 (59-223)||(8726929-8727095)
chr7 (65-275)||(31266815-31267026)
chr7 (59-227)||(39477757-39477924)
chr7 (59-275)||(7414583-7414807)
chr7 (81-232)||(18236893-18237043)
chr7 (61-158)||(21615474-21615571)
chr7 (59-204)||(13798670-13798815)
chr7 (59-196)||(28065776-28065914)
chr7 (66-227)||(12082388-12082549)
chr7 (59-162)||(11823872-11823976)
chr7 (59-204)||(40592084-40592229)
chr7 (61-152)||(18146354-18146446)
chr7 (100-202)||(16887077-16887179)
chr7 (59-122)||(47268343-47268406)
chr7 (179-227)||(21615582-21615630)
[»] chr6 (14 HSPs)
chr6 (59-227)||(24559329-24559496)
chr6 (59-232)||(800489-800663)
chr6 (61-230)||(5570600-5570767)
chr6 (61-273)||(20243600-20243804)
chr6 (61-273)||(22137584-22137788)
chr6 (59-196)||(3098084-3098222)
chr6 (59-210)||(19242284-19242435)
chr6 (63-167)||(34208317-34208420)
chr6 (63-156)||(18744543-18744637)
chr6 (75-161)||(446073-446159)
chr6 (100-223)||(4286548-4286679)
chr6 (117-195)||(28050772-28050850)
chr6 (59-141)||(12026634-12026716)
chr6 (59-141)||(12033554-12033636)
[»] chr3 (18 HSPs)
chr3 (59-227)||(14264882-14265050)
chr3 (59-232)||(48088267-48088441)
chr3 (61-222)||(17370275-17370435)
chr3 (59-188)||(13626320-13626449)
chr3 (59-274)||(1639182-1639392)
chr3 (61-221)||(39417672-39417831)
chr3 (61-227)||(7953539-7953707)
chr3 (59-167)||(25577302-25577410)
chr3 (61-162)||(6465052-6465153)
chr3 (59-204)||(37280814-37280958)
chr3 (59-220)||(19234530-19234691)
chr3 (61-274)||(43687512-43687732)
chr3 (73-220)||(8634123-8634270)
chr3 (59-210)||(36722072-36722222)
chr3 (83-214)||(53561237-53561369)
chr3 (66-166)||(29635503-29635603)
chr3 (61-166)||(3163217-3163322)
chr3 (59-105)||(6753666-6753712)
[»] chr2 (17 HSPs)
chr2 (59-222)||(21557334-21557497)
chr2 (59-204)||(20147471-20147616)
chr2 (59-295)||(26618054-26618288)
chr2 (73-227)||(32734113-32734267)
chr2 (59-204)||(16706176-16706321)
chr2 (59-167)||(29110556-29110664)
chr2 (73-204)||(29905934-29906064)
chr2 (59-210)||(40500777-40500928)
chr2 (59-204)||(42241809-42241953)
chr2 (59-167)||(5307064-5307172)
chr2 (59-143)||(18878056-18878141)
chr2 (73-167)||(27651379-27651474)
chr2 (59-132)||(37058464-37058537)
chr2 (59-119)||(6899497-6899558)
chr2 (59-97)||(20530345-20530383)
chr2 (59-97)||(28277465-28277503)
chr2 (119-167)||(39091962-39092010)
[»] chr8 (8 HSPs)
chr8 (73-227)||(40414066-40414220)
chr8 (59-196)||(16575056-16575193)
chr8 (61-223)||(14998692-14998855)
chr8 (72-161)||(43692539-43692628)
chr8 (59-190)||(22843916-22844047)
chr8 (59-167)||(32109528-32109637)
chr8 (84-167)||(12785816-12785899)
chr8 (59-111)||(24630463-24630515)
[»] scaffold0489 (1 HSPs)
scaffold0489 (59-210)||(7505-7656)
[»] scaffold0121 (1 HSPs)
scaffold0121 (61-220)||(4680-4833)
[»] scaffold0004 (1 HSPs)
scaffold0004 (59-155)||(39325-39421)
[»] scaffold0294 (1 HSPs)
scaffold0294 (59-167)||(511-619)
[»] scaffold0591 (1 HSPs)
scaffold0591 (59-141)||(2217-2299)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 58 - 460
Target Start/End: Complemental strand, 31931209 - 31930807
Alignment:
Q  58 gtctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31931209 gtctaattgaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 31931110  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgca 257  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |     
T  31931109 tgaagaaattagggatttcgttgatttgagagagtttttggagatttgagatgagaaatgaggaaatgagttgcttgtatggcctttaaaaggacacacg 31931010  T
Q  258 gcgtgacttaactcacgcgatgtttaacacatgcgtgacttataatactagaggtatttttgagagtgtagtcgggagtaagcaaaacgtgatgagagaa 357  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |||||| |||||    
T  31931009 gcgtgacttaactcacgcggtgtttaacacatgcgtgacttataatactagaggtattttcgggagtgtagttgggagtaagcaaaatgtgatgggagaa 31930910  T
Q  358 gagcatttttctcattcaaatcatnnnnnnnntccattaaggacataactcttgcataagtaaccattgtcattccattgggctaattctttagcctttt 457  Q
    ||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31930909 gagcatttttctcattcaaatcataaaaaaaatcgattaaggacataactcttgcataagtaaccattgtcattccattgggctaattctttagcctttt 31930810  T
Q  458 tat 460  Q
    |||    
T  31930809 tat 31930807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 42420662 - 42420447
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  42420662 tctaatttaagaggaaaaatgtaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggaatgttgtttgatttgaact 42420563  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgca 257  Q
    ||||| |||| || ||||   ||||||||||||| |||||||||||| ||||| ||| |||| ||||  | | | ||| || | ||||||| ||||||||    
T  42420562 tgaaggaatttgg-atttgggtgatttgagagagattttggagattttagatgggaaatgagaaaatagggttc-tgtctgacctttaaaacgacacgca 42420465  T
Q  258 gcgtgacttaactcacgc 275  Q
    |||||| |||||||||||    
T  42420464 gcgtgagttaactcacgc 42420447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 18412102 - 18411935
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  18412102 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaactt 18412003  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatga 226  Q
    |||||||||  ||||||   | ||||||||||  |||| ||||||| ||||| ||| |||||||||||    
T  18412002 gaagaaattttgaatttgggtaatttgagagaaatttttgagattttagatgggaaatgaggaaatga 18411935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 13850377 - 13850209
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||| |||||||||||    
T  13850377 tctaatttaagagaaaaaatctaacatataaacataaaagcttaatggtgtttgattatgaaaacttacttgttaagggagtgatgtttgatttgaactt 13850278  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||  | ||||   ||||||||||||  |||||||||||| |||||| |||||||||||||||    
T  13850277 gaaggaattttggatttgggtgatttgagagacattttggagattttagatgaaaagtgaggaaatgag 13850209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 24606245 - 24606077
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  24606245 tctaatttaagagaaaaaatctaacatataaacataaaaggttaattgtgtttgattatgaaaacttacttgttattagagtgttgtttgatttgaactt 24606146  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||  | |||| | ||||| |||| || |||| ||||||| | ||||||| ||||||||||||    
T  24606145 gaaggaattttggatttgagtgattagagatagatttttgagattttatatgagaaatgaggaaatgag 24606077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 13865904 - 13865740
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||    
T  13865904 tctaatttaagagaaaaaatctaacatataaacataaaagcttaatggtgtttgattatgaaaacttacttgttaatggagtgatgtttgattttaactt 13865805  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaa 223  Q
    |||| ||||  | ||||   |||||| |||||  |||||||||||| ||||||||||||||||||    
T  13865804 gaaggaattttggatttgggtgatttaagagacattttggagattttagatgagaagtgaggaaa 13865740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 31825571 - 31825716
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  31825571 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 31825670  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    |||| ||||  | ||||   |||||||| |||| |||| |||||||    
T  31825671 gaaggaattttggatttgggtgatttgatagagatttttgagattt 31825716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 14331417 - 14331584
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |    
T  14331417 tctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttggacct 14331515  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||    |||| | ||||||||||||| |||| ||||||| ||||||||| ||||||||||||    
T  14331516 gaaggaattttagatttgagtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 14331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 31825325 - 31825433
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  31825325 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 31825424  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  31825425 gaaggaatt 31825433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 17210764 - 17210670
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17210764 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaatt 17210670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 27759143 - 27759001
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  27759143 tctaatttaagcgaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 27759044  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggaga 201  Q
    |||| ||||  | ||||   ||||||||||||| |||| ||||    
T  27759043 gaaggaattttggatttggatgatttgagagagatttttgaga 27759001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 31323811 - 31323658
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||  | |    
T  31323811 aaaaatctaacatataaacataaaagcctaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaatttgaaggaattttgga 31323712  T
Q  173 tttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||   ||| ||||||||| |||||||||||| ||||||||| ||||||||||||    
T  31323711 tttgggtga-ttgagagagattttggagattttagatgagaaatgaggaaatgag 31323658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 21711035 - 21710904
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||  | |    
T  21711035 aaaaatataaaatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 21710936  T
Q  173 tttcattgatttgagagagtttttggagattt 204  Q
    |||   ||||||||||||| |||| |||||||    
T  21710935 tttggatgatttgagagagatttttgagattt 21710904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 20779650 - 20779826
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtt-------ggatt 151  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||    
T  20779650 tctaatttaagagaaaaaatataacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttaagatt 20779749  T
Q  152 tgaacttgaagaaattaggaatttcattgatttgagagag-tttttggagatttgagatgagaagtgaggaaatgag 227  Q
    | ||||||||| ||||  | ||||   |||||||| |||| ||||| ||||||| ||||||||| ||||||||||||    
T  20779750 taaacttgaaggaattttggatttgggtgatttgaaagagattttttgagattttagatgagaaatgaggaaatgag 20779826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 32938577 - 32938680
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  32938577 tctaatttaagacaaaaaatctaacatataaacattaaaggtaaatgatgtttgattatgaaaacttacttgtgattggagtgttgtttgatttgaactt 32938676  T
Q  159 gaag 162  Q
    ||||    
T  32938677 gaag 32938680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 49063461 - 49063366
Alignment:
Q  72 gaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  49063461 gaaaaatacaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaatt 49063366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 20759714 - 20759792
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattg 136  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  20759714 tctaatttaagaggaaaaatctaacatataaatataaaaaggttaatggtgtttgattatgaaaacttacttgttattg 20759792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 20766105 - 20766183
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattg 136  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  20766105 tctaatttaagaggaaaaatctaacatataaatataaaaaggttaatggtgtttgattatgaaaacttacttgttattg 20766183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 44099975 - 44099879
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaa 155  Q
    |||||||||||||||||||| ||||||||||||||||||  | ||||||  |||||| |||||||||||||||||||||||||||||| ||||||||    
T  44099975 tctaatttaagaggaaaaatgtaacatataaacataaaatatcaatggtacttgattgtgaaaacttacttgttattggagtgttgtttgatttgaa 44099879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 23125248 - 23125381
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaagg-ttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| |||| |||||||||| ||||||||| | |||| | | ||||||||||||||||||||||||||| |||||||||| |||||||| |    
T  23125248 tctaatttaagagaaaaattctaacatatcaacataaaaagattaacgatatttgattatgaaaacttacttgttattagagtgttgtttgatttgaagt 23125347  T
Q  158 tgaagaaattaggaatttcattgatttgagagag 191  Q
    ||||| ||||  ||||||   |||||||||||||    
T  23125348 tgaaggaattttgaatttgggtgatttgagagag 23125381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 39039485 - 39039566
Alignment:
Q  86 ataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    ||||| |||||| |||||||||  || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  39039485 ataaatataaaatgttaatggtacttaattatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaatt 39039566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 12587257 - 12587152
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||||||   | |||||||| ||||||||| |||||||||  | ||||||||||||||||||||||||| |||| |||  |||||||| ||||    
T  12587257 taatttaagaggaacgttgtaacatattaacataaaatgttaatggtaatggattatgaaaacttacttgttattgaagtggtgtctgatttgaatttga 12587158  T
Q  161 agaaat 166  Q
    ||||||    
T  12587157 agaaat 12587152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 59 - 295
Target Start/End: Original strand, 21760952 - 21761185
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21760952 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaactt 21761051  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgcag 258  Q
    |||| ||||  | ||||   |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||   ||||||||||||||||     
T  21761052 gaaggaattttggatttgggtgatttgagagaatttttggagatttgagatgagaaatgaggaaatgagttgc-tgt-tgagctttaaaaggacacgcaa 21761149  T
Q  259 cgtgacttaactcacgcgatgtttaacacatgcgtga 295  Q
     |||| |||||||||||   |||||||||||||||||    
T  21761150 tgtgagttaactcacgc-tggtttaacacatgcgtga 21761185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 25804143 - 25804311
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  25804143 taatttaagaggaaaaatctaacatataaacataaaatgttactggtttttgattatgaaaacttatttgttattggagtgttgtttgatttgaacttga 25804242  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagtt 229  Q
    | |||||| | |||| |||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||||    
T  25804243 aaaaattaaggatttgattgatttgagagagtttttagagattttagatgtgaaatgaggaattgagtt 25804311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 69 - 369
Target Start/End: Complemental strand, 15471180 - 15470879
Alignment:
Q  69 gaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  15471180 gaggaaaaatctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgctttgaacttgaaggaatt 15471081  T
Q  168 aggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgcagcgtgactta 267  Q
      | ||||   ||||||||||||  |||||||||||| ||||| ||| |||||||||||| |   ||| ||   |||||||||| ||||| ||||| |||    
T  15471080 ttggatttgggtgatttgagagaaattttggagattttagatgggaaatgaggaaatgagct-tatgtctgagctttaaaaggatacgcaacgtgagtta 15470982  T
Q  268 actcacgcgatgtttaacacatgcgtgactta--taatactagaggtatttttgagagtgtagtcgggagtaagcaaaacgtgatgagagaagagcattt 365  Q
    ||||||||   ||||||||||||||||| |||  | |  |||| |||||||| || ||| | || |||| |||||||||| || || |||||||||||||    
T  15470981 actcacgc-tggtttaacacatgcgtgagttaactcacgctaggggtattttcgaaagtttggttgggaataagcaaaacttgttgggagaagagcattt 15470883  T
Q  366 ttct 369  Q
    ||||    
T  15470882 ttct 15470879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 48707493 - 48707663
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  48707493 tctaatctaagaggaaaaatctaacatataaacataaacggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttaaactt 48707592  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttg 230  Q
    |||| ||||  | ||||  |||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||    
T  48707593 gaaggaatttcggatttggttgatttgagagagattttgtagattttagatgtgaa-agaggaaatgagttg 48707663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 48569126 - 48569300
Alignment:
Q  59 tctaatttaagaggaaaa-atctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  48569126 tctaatttaagagaaaaaaatctaacatataaacataaaaggttaatgatgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaact 48569225  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgct 232  Q
    ||||| ||||  | ||||   ||||||||||||| |||| ||||||| ||||||||| |||||||||||| ||||    
T  48569226 tgaaggaattttggattttggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgaggtgct 48569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 5764696 - 5764535
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  5764696 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggattgttgtgtgatttgaactt 5764597  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgagg 220  Q
    |||  ||||  ||||||   ||||||||||||| |||| ||||||| |||| |||| |||||    
T  5764596 gaatgaattttgaattttggtgatttgagagaggtttttgagattttagataagaaatgagg 5764535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 49599571 - 49599679
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49599571 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtctttgattatgaaaacttacttgttattggagtgttgtttgatttgaactt 49599670  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  49599671 gaaggaatt 49599679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 21485348 - 21485456
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21485348 tctaatttaagagagaaaatttaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaactt 21485447  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  21485448 gaaggaatt 21485456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 26088969 - 26088763
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |    
T  26088969 tctaatttaagaggaaaaatctaacata--aacataaaaaggttaatggtgtttgattatgaaaatttacttgttattggtgtgttgtttgatttgaagt 26088872  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgca 257  Q
    ||||| ||||  | ||||   ||||||||||||| ||||||||||   ||||||||| |||| ||||||| |   ||| || | ||||||||||||||||    
T  26088871 tgaagtaattttggatttgggtgatttgagagagattttggagat---agatgagaaatgagaaaatgaggt-tatgtctgacctttaaaaggacacgca 26088776  T
Q  258 gcgtgacttaact 270  Q
    |||||| ||||||    
T  26088775 gcgtgagttaact 26088763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 34335834 - 34335718
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  34335834 tctaatttaagaggaaaaatgtagcatataaacataaaatgttaatggtacttgattatgaaaacttacttgttattggagtgttggttgatttgaactt 34335735  T
Q  159 gaagaaattaggaattt 175  Q
    ||||||||| |||||||    
T  34335734 gaagaaattgggaattt 34335718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 41875600 - 41875708
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  41875600 tctaatttaagagaaaaaatccaacatataaacataaaaggttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 41875699  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  41875700 gaaggaatt 41875708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 3658152 - 3658044
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  3658152 tctaattttagagaaaaaatctaacatataaacataaaatgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 3658053  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  3658052 gaaggaatt 3658044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 27259556 - 27259405
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||||| ||||| ||||| |||||    
T  27259556 tctaatttaagaggaaaaatctaacatataaatataaaaggttaatgttgtttgattatgaaaacttagttgttactggagtattgtttgattttaactt 27259457  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    |||  ||||  | ||||  |||||| | ||||| |||||||||||| |||||    
T  27259456 gaaagaattttggatttggttgattagggagagattttggagattttagatg 27259405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 39224935 - 39225030
Alignment:
Q  72 gaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  39224935 gaaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaatt 39225030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 18169518 - 18169358
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |    
T  18169518 tctaatttatgag-aaaaatataacatataaacataaaaggttaagggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacat 18169420  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgagg 220  Q
    |||| ||||  | ||||   ||||||||||||| |||| ||||||| | ||||||| |||||    
T  18169419 gaaggaattttggatttgggtgatttgagagagatttttgagattttatatgagaaatgagg 18169358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 18841943 - 18841834
Alignment:
Q  59 tctaatttaagag-gaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||| ||||| ||||    
T  18841943 tctaatttaagagagaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttttttgttattggtgtgttgtttgatttaaact 18841844  T
Q  158 tgaagaaatt 167  Q
    ||||| ||||    
T  18841843 tgaaggaatt 18841834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 46182265 - 46182441
Alignment:
Q  59 tctaatttaagaggaaaaa--tctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaac 156  Q
    ||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||  ||| ||||||| ||||||| |    
T  46182265 tctaatttaagagaaaaaaaatctaatatataaatataaaaggttaatggtgtttgatcatgaaaacttatttgttaccggactgttgtttgatttgagc 46182364  T
Q  157 ttgaagaaattaggaatttcattgatttgagagag-tttttggagatttgagatgagaagtgaggaaatgagttgct 232  Q
    |||||| ||||  ||||||   ||||||||||||| ||||| ||||||| |||| |||| |||| ||||||| ||||    
T  46182365 ttgaaggaattttgaatttgggtgatttgagagagattttttgagattttagataagaaatgagaaaatgaggtgct 46182441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 27799249 - 27799142
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||| ||||||||| |||||||||||||||||   ||||||||  ||||||||||||||||||||||||||| ||||||| | |||||||||||    
T  27799249 tctaatttaaaaggaaaaatgtaacatataaacataaata-ttaatggtacttgattatgaaaacttacttgttattgaagtgttggttgatttgaactt 27799151  T
Q  159 gaagaaatt 167  Q
    ||| |||||    
T  27799150 gaaaaaatt 27799142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 12025803 - 12025654
Alignment:
Q  60 ctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttg 159  Q
    |||||| |||| ||||||| |||||||||||||||||| || |||  |  |||||||| |||| |||| ||||||||| |||||| | ||||||||||||    
T  12025803 ctaattaaagatgaaaaatgtaacatataaacataaaatgtcaataatacttgattataaaaaattacgtgttattggggtgttggttgatttgaacttg 12025704  T
Q  160 aagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    | |||||| ||  |||   |||||||||||||||||| ||||||| |||||    
T  12025703 atgaaatt-ggggtttggatgatttgagagagtttttagagattttagatg 12025654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 6086564 - 6086612
Alignment:
Q  179 tgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    ||||||||||||| |||| ||||||| |||||| || ||||||||||||    
T  6086564 tgatttgagagagatttttgagattttagatgacaaatgaggaaatgag 6086612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 28717706 - 28717537
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatat---aaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaa 155  Q
    ||||||||||||| |||||||||||||||   ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28717706 tctaatttaagagaaaaaatctaacatattataaacataaaag-ttaatgatgtttgattatgaaaacttacttgctattggagtgttgttggatttgaa 28717608  T
Q  156 cttgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatga 226  Q
     |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  28717607 attgaagaaattaggaatttggttgatttgagagagtttttggatatttgagatgagaaatgaggaaatga 28717537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 10975446 - 10975232
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||  |||||||||||    
T  10975446 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatgatgtttgattttgaaaacttacttgttattggagtattgtgtgatttgaactt 10975347  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgcag 258  Q
    |||| ||||  | ||||  |||||||||||||  |||||||||||| ||| | |||  ||||||||||||||| ||| ||   ||||||||||||||||     
T  10975346 gaaggaattttggatttggttgatttgagagaaattttggagattttagaagtgaa-agaggaaatgagttgc-tgtctgatttttaaaaggacacgcaa 10975249  T
Q  259 cgtgacttaactcacgc 275  Q
    | |||||||||||||||    
T  10975248 catgacttaactcacgc 10975232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 2598846 - 2598678
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  2598846 tctaatttaagagaaaaaatctaacatataaacataaaagtttaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaactt 2598747  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
     ||| ||||  | ||||   |||||||| |||| |||||||||||| |||||| || ||||||||||||    
T  2598746 taaggaattttggatttgggtgatttgaaagagattttggagattttagatgaaaaatgaggaaatgag 2598678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 25361172 - 25361307
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25361172 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaatttga 25361271  T
Q  161 a-gaaattaggaatttcattgatttgagagagttttt 196  Q
    | ||| |||||| ||| | ||||||||||||| ||||    
T  25361272 aggaatttaggattttga-tgatttgagagagatttt 25361307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 15798668 - 15798834
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    |||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  15798668 tctaatgtaagaagaaaaatccaacatataaacataaaaaggttaatggtgtttcattatgaaaacttacttgttattggagtgttgtttgatttaaact 15798767  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaat 224  Q
    ||||| ||||  | ||||   ||||||||||||| |||||||||||| ||||| ||| |||||||||    
T  15798768 tgaaggaattttggatttgggtgatttgagagagattttggagattttagatgggaaatgaggaaat 15798834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 4113804 - 4113973
Alignment:
Q  59 tctaatttaagaggaaaaa-tctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  4113804 tctaatttaagagaaaaaaatctaatatataaacataaaaggttaatggtgtttgattatgaaaatttacttgttattggagtgttgtttgatttgaact 4113903  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    ||||| ||||    ||||   ||| ||||||||  |||| ||||||| ||||||||| ||||||||||||    
T  4113904 tgaaggaattttagatttgggtgacttgagagatatttttgagattttagatgagaaatgaggaaatgag 4113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 12805058 - 12804890
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||| ||    
T  12805058 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatgatgtttgattatgaaaacttacttgttactcgagtgttgtttgatttgaattt 12804959  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||  ||||||   ||||||||||| | |||| | |||||  ||| |||| ||||||||||||    
T  12804958 gaaggaattttgaatttaggtgatttgagagggatttttgtgatttttgataagaaatgaggaaatgag 12804890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 7081784 - 7081640
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  7081784 tctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 7081686  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    |||| ||||  | ||||   ||||||||||||| |||| |||||||    
T  7081685 gaaggaattttggatttggatgatttgagagagatttttgagattt 7081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 23229324 - 23229456
Alignment:
Q  65 ttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaaga 163  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||     
T  23229324 ttaagaggaaaaatctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttacttgtttttagagtgttgtttgatttgaacttgaagt 23229423  T
Q  164 aattaggaatttcattgatttgagagagttttt 196  Q
    ||||  ||||||   |||||| |||||| ||||    
T  23229424 aattttgaatttgggtgatttaagagagatttt 23229456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 12742239 - 12742075
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| | |||||||||| |||||||||||    
T  12742239 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaa----acttgttactcgagtgttgtttgatttgaactt 12742144  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||  ||||||   ||||||||||| | |||| | |||||  ||| |||| ||||||||||||    
T  12742143 gaaggaattttgaatttaggtgatttgagagggatttttgtgatttttgataagaaatgaggaaatgag 12742075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 33370122 - 33369991
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||| ||||  | |    
T  33370122 aaaaaactaacatataaacataaaatgttaatggtgtttgattatgaaaacttagatgttattgaagtgttgtttgatttgaacttgaaggaattttgga 33370023  T
Q  173 tttcattgatttgagagagtttttggagattt 204  Q
    |||   ||||||||||||| |||| |||||||    
T  33370022 tttgggtgatttgagagagatttttgagattt 33369991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 36317622 - 36317728
Alignment:
Q  59 tctaatttaagaggaa--aaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaa 155  Q
    ||||||||||||| ||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36317622 tctaatttaagagcaataaaatctaacatatcaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaa 36317721  T
Q  156 cttgaag 162  Q
     ||||||    
T  36317722 gttgaag 36317728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 16418677 - 16418827
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||  ||||||||||||||||||  | ||||||  ||||||||| |||||||||||||||| |||||||| |  |||| |||||    
T  16418677 tctaatttaagaggaaaaaattaacatataaacataaaatatcaatggtacttgattatg-aaacttacttgttattagagtgttggttaatttaaactt 16418775  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    ||| |||||  | ||||   |||||| |||||||||||  |||||| |||||    
T  16418776 gaaaaaattgcggatttagatgatttaagagagtttttaaagattttagatg 16418827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 17196056 - 17196159
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaa-aggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| ||||||  ||||||  |||||||| ||||||||||| |||| ||||||||| |||||| |||||  |||||| || ||||||||||    
T  17196056 tctaatttaagagaaaaaataaaacataacaacataaataggttaatggtatttggttatgaaaatttacttattattaaagtgttatttgatttgaact 17196155  T
Q  158 tgaa 161  Q
    ||||    
T  17196156 tgaa 17196159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 22858335 - 22858408
Alignment:
Q  94 aaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    |||||||||||| | ||| ||| ||||||||||||||||||| |||||||||| |||||||| |||||| ||||    
T  22858335 aaaaggttaatgatatttaattttgaaaacttacttgttattagagtgttgtttgatttgaatttgaaggaatt 22858408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 19747685 - 19747600
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatt 151  Q
    ||||||||||||| |||||||||| | |||     ||||||||||| |||||||||||||||||||||||||  ||| |||||||||| ||||    
T  19747685 tctaatttaagagaaaaaatctaaaacata-----aaaaggttaatagtgtttgattatgaaaacttacttg--attagagtgttgtttgatt 19747600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 27318413 - 27318573
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  27318413 tctaatttaagaagaaaaatctaacatataaatataaaaggttaatgatgttttattatgaaaacttacttgttattggagtgttcttggatttcaactt 27318512  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgag 219  Q
    |||||||||||| ||||  || || ||||||||||||||||||||||||||||||| ||||    
T  27318513 gaagaaattagggatttggtttatctgagagagtttttggagatttgagatgagaaatgag 27318573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 8726929 - 8727095
Alignment:
Q  59 tctaatttaagaggaaaaa--tctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaac 156  Q
    ||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8726929 tctaatttaagagaaaaaaaatctaagatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaac 8727028  T
Q  157 ttgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaa 223  Q
    |||||||||||  | ||||   ||||||||||||| |||| ||||||| ||||||||| ||||||||    
T  8727029 ttgaagaaattttggatttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaa 8727095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 65 - 275
Target Start/End: Complemental strand, 31267026 - 31266815
Alignment:
Q  65 ttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaaga 163  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  31267026 ttaagaggaaaagtctaacatataaacataaaaaggttaatggtgtttgattatgaaaacttaccttttattggagtgttgtttgatttgaacttgaaga 31266927  T
Q  164 aattaggaatttcattgatttgagagagtttttggaga-tttgagatgagaagtgaggaaatg-agttgcttgtatggcatttaaaaggacacgcagcgt 261  Q
    ||||  | ||||   ||||||||||||| ||||||||| ||| ||||| ||| |||||||||| ||||  |||| || | ||||||||||||| ||| ||    
T  31266926 aattttggatttgggtgatttgagagagattttggagattttcagatgggaaatgaggaaatgaagtt--ttgtctgacttttaaaaggacacacagtgt 31266829  T
Q  262 gacttaactcacgc 275  Q
    || |||||| ||||    
T  31266828 gagttaacttacgc 31266815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 39477757 - 39477924
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  39477757 tctaatttatgag-aaaaatataacatataaacataaaatgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 39477855  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||  | ||||   ||||||||||||| |||| ||||||| ||||||||| ||||||||||||    
T  39477856 gaaggaattttggatttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 39477924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 275
Target Start/End: Original strand, 7414583 - 7414807
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaa-aggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| |||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7414583 tctaatttaagagcaaaattctagcatataaacataaataggtcaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 7414682  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaa--------gtgaggaaatgagttgcttgtatggcatttaaaag 249  Q
    ||||| ||||  ||||||   |||||||||| || |||| ||||||| ||||| |||        ||||||||||||| | | | | |||| |||||||     
T  7414683 tgaaggaattttgaatttgggtgatttgagaaagatttttgagattttagatgggaaatgatgacgtgaggaaatgaggttc-tatttggcctttaaaaa 7414781  T
Q  250 gacacgcagcgtgacttaactcacgc 275  Q
    |||||||||||||| |||||||||||    
T  7414782 gacacgcagcgtgagttaactcacgc 7414807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 18237043 - 18236893
Alignment:
Q  81 aacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaatttcattg 180  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||||  ||||||   ||    
T  18237043 aacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaaggaattttgaatttgggtg 18236944  T
Q  181 atttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgct 232  Q
    |||||||||||||||| ||||||| ||||||||| ||| |||| ||| ||||    
T  18236943 atttgagagagttttt-gagattttagatgagaaatgaagaaaggaggtgct 18236893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 21615474 - 21615571
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  21615474 taatttaagagaaaaaatctaacatataaacatacaaggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactt 21615571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 13798815 - 13798670
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||  ||||||||| |||||||| ||    
T  13798815 tctaatttaagagaaaaaatctaacatataaacataaaaaattaatggtgtttgattatgaaagcttacttgttattatagtgttgtttgatttgaattt 13798716  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    |||| ||||  | ||||   ||||||||||||| |||| |||||||    
T  13798715 gaaggaattttggatttggatgatttgagagagatttttgagattt 13798670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 28065914 - 28065776
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| |||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  28065914 tctaatttaagagaaaaattcaaacatatcaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaagt 28065815  T
Q  158 tgaagaaattaggaatttcattgatttgagagagttttt 196  Q
    ||||| ||||  | |||| | | ||||||||||| ||||    
T  28065814 tgaaggaatttcggatttgaattatttgagagagatttt 28065776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 12082549 - 12082388
Alignment:
Q  66 taagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaa 164  Q
    |||||| |||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||| | |    
T  12082549 taagagaaaaaatctaatatatcaacataaaaaggttaatggtgttggattatgaaaacttacttgttattggagtgttgtttgatttaaagttgatgga 12082450  T
Q  165 attaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||  | ||||   |||||| |||||| |||| | ||||| ||||| ||||||||||||||||    
T  12082449 atttcggattttggtgatttaagagagattttag-gattttagatgggaagtgaggaaatgag 12082388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 11823976 - 11823872
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaa-aggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||||||||||| ||||||  |||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||| |    
T  11823976 tctaatttaagaggaaaaatcaaacataacaacataaataggttaatgatgtttgattatgaaagcttacttattattggagtgttgtttgatttgaagt 11823877  T
Q  158 tgaag 162  Q
    |||||    
T  11823876 tgaag 11823872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 40592229 - 40592084
Alignment:
Q  59 tctaatttaagaggaaaaa-tctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||| ||  || |||||||||||||| ||||||||| ||||||||||    
T  40592229 tctaatttaagagaaaaaaatataacatataaacataaaaagttaatggtgtttgatcatttaa-cttacttgttattgaagtgttgtttgatttgaact 40592131  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    ||||| ||||  | ||||   |||||||| |||| |||| |||||||    
T  40592130 tgaaggaattttggatttgggtgatttgaaagagatttttgagattt 40592084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 18146446 - 18146354
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggattt 152  Q
    ||||||||| | ||||||||| ||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  18146446 taatttaagtgaaaaaatctatcataccaacataaaaaggttaatggtgtatgattatgaaaacttacttgttattggagtgttgtttgattt 18146354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 16887077 - 16887179
Alignment:
Q  100 ttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaatttcattgatttgagagagtttttgga 199  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||  | |||||||| ||||||||| | ||||  || ||||  |||||||||||||    
T  16887077 ttaatggtgtttgattatgaaaacttacttgttattgaagtgctgtttaaattgaacttaaagaaattaaggatttggtttatttatgagagtttttgga 16887176  T
Q  200 gat 202  Q
    |||    
T  16887177 gat 16887179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 47268406 - 47268343
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaa 122  Q
    |||||||||| || || |||||||||||||||||||||||||||||||| |||||| |||||||    
T  47268406 tctaatttaaaagaaagaatctaacatataaacataaaaggttaatggtatttgatcatgaaaa 47268343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 21615582 - 21615630
Alignment:
Q  179 tgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    ||||||||||||| |||| ||||||| ||||||||| ||||||||||||    
T  21615582 tgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 21615630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 24559496 - 24559329
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||     
T  24559496 tctaatttaagaggaaatatctaacatataaacataaaatgttaatagtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactg 24559397  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||||||||||| ||||  ||||||||| ||||||||||||||||| ||||| |||  |||||||||||    
T  24559396 gaagaaattagggatttggttgatttgaaagagtttttggagattttagatgtgaa-agaggaaatgag 24559329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 800663 - 800489
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||| |||| |||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  800663 tctaattttagagaaaaaatctaacatgcaaacataaatggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 800564  T
Q  159 gaagaaattaggaatttcattgatttgagagag-tttttggagatttgagatgagaagtgaggaaatgagttgct 232  Q
    |||| ||||  | ||||   ||||||||||||| ||||| ||||||| ||||||||| |||||||||||| ||||    
T  800563 gaaggaattttggatttgggtgatttgagagagattttttgagattttagatgagaaatgaggaaatgagctgct 800489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 5570767 - 5570600
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  5570767 taatttaagaggaaaaatctaacatataaacataaaatgttaatgtcgtttgattacgaaaacttacttgttattggagtgttgtttgatttgaacttga 5570668  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttg 230  Q
    |  ||||| ||||||   |||||||||| || ||||  |||| ||| |  |||| |||||||||||||||    
T  5570667 aagaattatgaatttgggtgatttgagaaagatttt--agatgtgaaaaaagaaatgaggaaatgagttg 5570600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 20243804 - 20243600
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    |||||||||| |||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||||       ||||||||||| | |||||||||||||    
T  20243804 taatttaagaagaaaaatctaacatataaacctaaaatgttaaaggtatttgattatgtaaactta-------ttggagtgttggttgatttgaacttga 20243712  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgcagcg 260  Q
    |||||||||  ||||  ||||||||||||||||| | ||||||| | ||| ||| ||||||||||||||| |||| ||   |||||||||| || || ||    
T  20243711 agaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttg-ttgtctgatttttaaaaggatacacaacg 20243613  T
Q  261 tgacttaactcac 273  Q
    |||||||||||||    
T  20243612 tgacttaactcac 20243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 22137788 - 22137584
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    |||||||||| |||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||||       ||||||||||| | |||||||||||||    
T  22137788 taatttaagaagaaaaatctaacatataaacctaaaatgttaaaggtatttgattatgtaaactta-------ttggagtgttggttgatttgaacttga 22137696  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgcagcg 260  Q
    |||||||||  ||||  ||||||||||||||||| | ||||||| | ||| ||| ||||||||||||||| |||| ||   |||||||||| || || ||    
T  22137695 agaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttg-ttgtctgatttttaaaaggatacacaacg 22137597  T
Q  261 tgacttaactcac 273  Q
    |||||||||||||    
T  22137596 tgacttaactcac 22137584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 3098084 - 3098222
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| |||||| ||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3098084 tctaatttaagagaaaaaatataacacataaatataaaaaggttaatgatgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaact 3098183  T
Q  158 tgaagaaattaggaatttcattgatttgagagagttttt 196  Q
    | ||| ||||  | ||||   ||||||||||||| ||||    
T  3098184 taaaggaattttggatttagatgatttgagagagatttt 3098222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 19242435 - 19242284
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||||  || |||||||| |||||||| |||||| ||||||| | |||||||||||    
T  19242435 tctaatttaagaggaaaaatgtaacatataaacataaaatgtcaatggtacttaattatgaatacttacttattattgcagtgttggttgatttgaactt 19242336  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    ||||||||     ||||   |||||||||||||||||| ||||||| |||||    
T  19242335 gaagaaatcgaagatttggatgatttgagagagtttttagagattttagatg 19242284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 34208420 - 34208317
Alignment:
Q  63 atttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaag 162  Q
    |||||||||||||||| ||| |||  ||||||||| |||||||||  |||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  34208420 atttaagaggaaaaatgtaaaataacaacataaaatgttaatggtacttgattatgaaaacttacttgttattggagcgttgtt-gatttgaacttgaag 34208322  T
Q  163 aaatt 167  Q
    |||||    
T  34208321 aaatt 34208317  T

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Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 18744543 - 18744637
Alignment:
Q  63 atttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaac 156  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18744543 atttaagaggaaaaatctaagttataaacataaaaaggttgatgttgtttgattatgaaaacttacttgttattggagttttgtttgatttgaac 18744637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 446073 - 446159
Alignment:
Q  75 aaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaa 161  Q
    |||||||||||||||| | |||| ||||||||||||||| ||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  446073 aaatctaacatataaatacaaaaagttaatggtgtttgactatgaaaacttacttattattgaagtattgtttgatttgaacttgaa 446159  T

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Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 4286679 - 4286548
Alignment:
Q  100 ttaatggtgtttgattatgaaaacttacttgt--------tattggagtgttgttggatttgaacttgaagaaattaggaatttcattgatttgagagag 191  Q
    |||||||||||||||||||||||||||||| |        ||||||||||||||| ||||||||||||||| ||||    ||||   |||||||||||||    
T  4286679 ttaatggtgtttgattatgaaaacttacttattattggagtattggagtgttgtttgatttgaacttgaaggaatttttgatttggatgatttgagagag 4286580  T
Q  192 tttttggagatttgagatgagaagtgaggaaa 223  Q
     |||| ||||||| ||||||||| ||||||||    
T  4286579 atttttgagattttagatgagaaatgaggaaa 4286548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 28050850 - 28050772
Alignment:
Q  117 tgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaatttcattgatttgagagagtttt 195  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| ||||  |||||| | | |||||||||||||||    
T  28050850 tgaaaacttacttgttattggagtgttgtttgatttgaagttgaaggaatttcgaatttgagtaatttgagagagtttt 28050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 12026716 - 12026634
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtg 141  Q
    |||||||||||||||||| | |||||||||||||||||  || ||||||  | ||||||| ||||||||||||||||| ||||    
T  12026716 tctaatttaagaggaaaattataacatataaacataaactgtcaatggtaatggattatggaaacttacttgttattgaagtg 12026634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 12033636 - 12033554
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtg 141  Q
    |||||||||||||||||| | |||||||||||||||||  || ||||||  | ||||||| ||||||||||||||||| ||||    
T  12033636 tctaatttaagaggaaaattataacatataaacataaactgtcaatggtaatggattatggaaacttacttgttattgaagtg 12033554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 59 - 227
Target Start/End: Complemental strand, 14265050 - 14264882
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  14265050 tctaatttaagagaaaaaatctaacatataaacataaaagcttaacggtgtttgattatgaaaacttacttgttaatggagtgttgttagatttgaactt 14264951  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||| ||||    ||||   ||||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  14264950 gaaggaatttttgatttgggtgatttgagagagattttggagattttagatgagaaatgaggaaatgag 14264882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 48088267 - 48088441
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  48088267 tctaattcaagagaaaaaatctaacatataaacataaaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttaatttgaact 48088366  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgct 232  Q
    ||||| ||||  |||||| | ||||||||||||| |||| ||||||| ||||||||| ||| |||||||| ||||    
T  48088367 tgaaggaattttgaatttgagtgatttgagagagatttttgagattttagatgagaaatgatgaaatgaggtgct 48088441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 17370435 - 17370275
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |    
T  17370435 taatttaagaggaaaaatctaacatataaaaataaaatgttaatggtgtttgattatgaaaacttacttgttattggagtgttgattgatttgaacttaa 17370336  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaa 222  Q
    ||||||| ||| |||   |||||||||||||||||| |||||||  |||||||| |||||||    
T  17370335 agaaatt-ggagtttggatgatttgagagagtttttagagatttaggatgagaaatgaggaa 17370275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 13626449 - 13626320
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  13626449 tctaatttaagaggaaaaatctaacatataaacataaaatgttaatggtgtttgattataaaaacttacttgttattgaagtgttgtttgatttgaactt 13626350  T
Q  159 gaagaaattaggaatttcattgatttgaga 188  Q
     ||||||||||| ||||  |||||||||||    
T  13626349 taagaaattagggatttggttgatttgaga 13626320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 59 - 274
Target Start/End: Original strand, 1639182 - 1639392
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  1639182 tctaatttaagaggaaaaatttaacatataaacataaaag-ttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaattt 1639280  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgcag 258  Q
    ||||||| || | ||||  || ||||  |||||||||||||||||||||||||||| |||| ||||||| ||| ||| || | ||||||||| ||| ||     
T  1639281 gaagaaaataaggattt-gttaattt--gagagtttttggagatttgagatgagaaatgagaaaatgagctgc-tgtctgacctttaaaagggcacacaa 1639376  T
Q  259 cgtgacttaactcacg 274  Q
     ||| |||||||||||    
T  1639377 tgtggcttaactcacg 1639392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 39417672 - 39417831
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |    
T  39417672 taatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt-a 39417770  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgagga 221  Q
    || ||||  ||||||   |||||||| |||| |||| ||||||| |||| |||| ||||||    
T  39417771 aggaattttgaatttgggtgatttgaaagagatttttgagattttagataagaaatgagga 39417831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 7953707 - 7953539
Alignment:
Q  61 taatttaagaggaaaaat-ctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttg 159  Q
    ||||||||||| |||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7953707 taatttaagagaaaaaaaactaatgtataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttg 7953608  T
Q  160 aagaaattaggaatttcattgatttgagagag-tttttggagatttgagatgagaagtgaggaaatgag 227  Q
    ||  ||||  | ||||   ||||||||||||| ||||| ||||||| ||||||||| ||||||||||||    
T  7953607 aacgaattttggatttgggtgatttgagagagattttttgagattttagatgagaaatgaggaaatgag 7953539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 25577302 - 25577410
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  25577302 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttatttgttattggagtgttgtttgatttgaactt 25577401  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  25577402 gaaggaatt 25577410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 6465052 - 6465153
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6465052 taatttaagagaaaaagtctaacatataaacataaaaggttaatgctgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttga 6465151  T
Q  161 ag 162  Q
    ||    
T  6465152 ag 6465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 37280958 - 37280814
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  37280958 tctaatttatgag-aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt 37280860  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    |||| ||||  | ||||   ||||||||||||| |||| |||||||    
T  37280859 gaaggaattttggatttgggtgatttgagagagatttttgagattt 37280814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 19234691 - 19234530
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  19234691 tctaatttaagagaaaaaatctaagatataaacataaaatgttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaactt 19234592  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgagg 220  Q
    |||  ||||  | ||||   | ||||||||||  |||| ||||||| ||||||||| |||||    
T  19234591 gaaagaattttggatttgggtaatttgagagaaatttttgagatttaagatgagaaatgagg 19234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 274
Target Start/End: Complemental strand, 43687732 - 43687512
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||  ||| |||||| |||||||||||||||| |||||||||||||    
T  43687732 taatttaaaaggaaaaatctaacatataaacataaaatgttaatgatgtttgattat-taaagttactttttattggagtgttgtttgatttgaacttga 43687634  T
Q  161 agaaattaggaatttcattgattt--gagagagtttttggagatttgagatgaga-------agtgaggaaatgagttgcttgtatggcatttaaaagga 251  Q
    || ||||  ||||||  |||||||  ||||||| |||||||||||| ||||| ||       | |||||||||| |||| |||| ||   ||||||||||    
T  43687633 aggaattttgaatttggttgatttgagagagagattttggagattttagatgtgaaagagttaatgaggaaatgggttg-ttgtgtgatctttaaaagga 43687535  T
Q  252 cacgcagcgtgacttaactcacg 274  Q
    || ||||||||||||||||||||    
T  43687534 catgcagcgtgacttaactcacg 43687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 8634123 - 8634270
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||  |      
T  8634123 aaaaatctaacatataaacataaaaggtaaatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaacttgaagaatttttggg 8634222  T
Q  173 tttcattgatttgagagagtttttggagatttgagatgagaagtgagg 220  Q
    |||   ||||||||||||| |||| ||||||| ||||||||| |||||    
T  8634223 tttgggtgatttgagagagatttttgagattttagatgagaaatgagg 8634270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 36722072 - 36722222
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  36722072 tctaatttatgag-aaaaatataacatataaacataaaatgttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgattcgaactt 36722170  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    |||  ||||  | ||||   |||||||| |||| |||| ||||||| |||||    
T  36722171 gaatgaattttggatttgggtgatttgaaagagatttttgagattttagatg 36722222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 53561369 - 53561237
Alignment:
Q  83 catataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaatttcattgat 182  Q
    |||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||  | ||||   ||||    
T  53561369 catataaatataaaaggttaatgatgtttgatcatgaaaactcacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgat 53561270  T
Q  183 ttgagagag-tttttggagatttgagatgagaa 214  Q
    ||||||||| ||||| ||||||| |||||||||    
T  53561269 ttgagagagattttttgagattttagatgagaa 53561237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 29635503 - 29635603
Alignment:
Q  66 taagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaa 165  Q
    ||||||||||||| ||||||||||||||||||  | ||||||  |||||||| ||||||||||| ||||||||||||||   |||||||| |||||||||    
T  29635503 taagaggaaaaatgtaacatataaacataaaatttcaatggtacttgattataaaaacttactttttattggagtgttgactgatttgaatttgaagaaa 29635602  T
Q  166 t 166  Q
    |    
T  29635603 t 29635603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 3163217 - 3163322
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    |||||||||| ||||||| |||||||||||||||||| || | ||||  | |||||||||||||| |||||||||  |||| || | |||||||| ||||    
T  3163217 taatttaagaagaaaaatgtaacatataaacataaaatgtaattggtaatggattatgaaaacttccttgttattaaagtggtgattgatttgaatttga 3163316  T
Q  161 agaaat 166  Q
    ||||||    
T  3163317 agaaat 3163322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 6753712 - 6753666
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatg 105  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||    
T  6753712 tctaatttaagagaaaaagactaacatataaacataaaaggttaatg 6753666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 21557334 - 21557497
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||    
T  21557334 tctaatttaagaggaaaaatctaacatataaacataaaatgttaatgatgtttgattatgacaacttacttgttattggagtgctgtttgatttgaactt 21557433  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaa 222  Q
    ||||||||||| |||||   ||||||||||||||||||  | | ||| |||||||| |||||||    
T  21557434 gaagaaattagaaatttggatgatttgagagagtttttaaatagttgggatgagaaatgaggaa 21557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 20147616 - 20147471
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  20147616 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttattattggagtgttgtttgatttgaactt 20147517  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    |||| ||||  | ||||   ||||||||||||| |||| |||||||    
T  20147516 gaaggaattttggatttgtgtgatttgagagagatttttgagattt 20147471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 59 - 295
Target Start/End: Original strand, 26618054 - 26618288
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  26618054 tctaatttaagagaaaaaatctaacatataaacataaaaaggttaatgatgtttgattatgaaaacttacttgctattggagtgttgtttgatttgaact 26618153  T
Q  158 tgaagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgagttgcttgtatggcatttaaaaggacacgca 257  Q
    ||||| ||||  | ||||   ||||||||||||| |||||||||||| ||||| |||  ||||||||||| |   ||| || | |||||||||||||| |    
T  26618154 tgaaggaattttggatttggatgatttgagagagattttggagattttagatgtgaa-agaggaaatgaggt-tatgtctgacctttaaaaggacacgta 26618251  T
Q  258 gcgtgacttaactcacgcgatgtttaacacatgcgtga 295  Q
    | |||| ||||||||| |   |||||||||||||||||    
T  26618252 gtgtgagttaactcacac-tggtttaacacatgcgtga 26618288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 32734267 - 32734113
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||  | |    
T  32734267 aaaaatctaacatgtaaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacttgaaggaattttgga 32734168  T
Q  173 tttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||   ||||||||||||| |||| ||||||| ||||||||| ||||||||||||    
T  32734167 tttgggtgatttgagagagatttttgagattttagatgagaaatgaggaaatgag 32734113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 16706321 - 16706176
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||    
T  16706321 tctaatttaagagaaaaaatctaacatataaacataaaaggttaatggtgtttgataatgaaaacttacgtgttattggagtgttgtttgatttgaactt 16706222  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
    |||| ||||  | ||||   ||||||||||||| |||| |||||||    
T  16706221 gaaggaattttggatttgggtgatttgagagagatttttgagattt 16706176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 29110664 - 29110556
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  29110664 tctaatttaagagaaaaaatataacatataaacataaaaggttaatggtgtttgattatgaaaacttatttgttattggagtgttgtttgatttgaactt 29110565  T
Q  159 gaagaaatt 167  Q
    |||| ||||    
T  29110564 gaaggaatt 29110556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 29906064 - 29905934
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||  | |    
T  29906064 aaaaatctaacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 29905965  T
Q  173 tttcattgatttgagagagtttttggagattt 204  Q
    |||   ||||||||||||| |||| |||||||    
T  29905964 ttt-ggtgatttgagagagatttttgagattt 29905934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 40500928 - 40500777
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| |  ||||||||||||||||| |||||||| |||||||| | ||||| |||||    
T  40500928 tctaatttaagaggaaaaatgtaacatataaacataaaatgttaatgatacttgattatgaaaacttaattgttatttgagtgttggttgatttaaactt 40500829  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    ||||||||| || || |  |||||||||||||||||||  |||||| |||||    
T  40500828 gaagaaattggggatatggttgatttgagagagtttttaaagattttagatg 40500777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 42241809 - 42241953
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  42241809 tctaatttatgag-aaaaatacaacatataaacataaaaggttaatggtgtttgatcatgaaaacttaattgttattggagtgttgtttgatttgaactt 42241907  T
Q  159 gaagaaattaggaatttcattgatttgagagagtttttggagattt 204  Q
     ||| ||||  | ||||   ||||||||||||| |||| |||||||    
T  42241908 aaaggaattttggatttgggtgatttgagagagatttttgagattt 42241953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 5307064 - 5307172
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||| ||||||||||| |||||||||||||||||| || ||| ||  ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  5307064 tctaatttcagaggaaaaatgtaacatataaacataaaatgtcaatagtacttgattatgaaaacttacttgttattggagtgttggttgatttgaactt 5307163  T
Q  159 gaagaaatt 167  Q
    |||||||||    
T  5307164 gaagaaatt 5307172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 18878141 - 18878056
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaag-gttaatggtgtttgattatgaaaacttacttgttattggagtgtt 143  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  18878141 tctaatttaagaggaaaaagctaacatataaacataaaaaagttaatggtgtttgattatgaaaacttacttgtgattggagtgtt 18878056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 27651379 - 27651474
Alignment:
Q  73 aaaaatctaacatataaacataaaagg-ttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    ||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||  ||||| |||||    
T  27651379 aaaaatctaacatatcaacataaaaagattaatggtatttgattatgaaaacttacttattattggaatgttgtttgatttgaggttgaataaatt 27651474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 37058537 - 37058464
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgtt 132  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||||  | |||||||||||||||||||||    
T  37058537 tctaatttaagaggaaaaatgtaacatataaacataaaatgtcaatggtaatggattatgaaaacttacttgtt 37058464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 6899558 - 6899497
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaac-ataaaaggttaatggtgtttgattatga 119  Q
    ||||||||||||  ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  6899558 tctaatttaagacaaaaaatctaacatataaacaataaaatgtaaatgatgtttgattatga 6899497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 20530345 - 20530383
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa 97  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  20530345 tctaattaaagaggaaaaatgtaacatataaacataaaa 20530383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 28277465 - 28277503
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaa 97  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  28277465 tctaattgaagatgaaaaatctaacatataaacataaaa 28277503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 39091962 - 39092010
Alignment:
Q  119 aaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    ||||||||||||||||||||||| |||  |||||||| ||||| |||||    
T  39091962 aaaacttacttgttattggagtggtgtctgatttgaatttgaaaaaatt 39092010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 40414220 - 40414066
Alignment:
Q  73 aaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattaggaa 172  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||  | |    
T  40414220 aaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgga 40414121  T
Q  173 tttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaatgag 227  Q
    |||   |||||||| |||| |||| ||||||| ||||||||| ||||||||||||    
T  40414120 tttgggtgatttgaaagagatttttgagattttagatgagaaatgaggaaatgag 40414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 16575193 - 16575056
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  16575193 tctaatttaagagaaaaaatctaacatataaacatgaaaggttaatggtgtttgattatgaaaaattacttgttattggagtgttgtttgatttgaactt 16575094  T
Q  159 gaagaaattaggaatttcattgatttgagagagttttt 196  Q
    |||| ||||  ||||||   ||||||||||||| ||||    
T  16575093 gaaggaattttgaatttgggtgatttgagagagatttt 16575056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 14998692 - 14998855
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaa-ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttg 159  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  14998692 taatttaacaggaaaaatctaacatacaaacataaaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttttattttaacttg 14998791  T
Q  160 aagaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgaggaaa 223  Q
    ||| ||||  ||| ||     ||||||||||| |||||||||||| ||||| ||| ||||||||    
T  14998792 aaggaattttgaagttggacaatttgagagagattttggagattttagatgggaaatgaggaaa 14998855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 43692628 - 43692539
Alignment:
Q  72 gaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaa 161  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  43692628 gaaaaatataacatataaacataaaaggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaa 43692539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 22843916 - 22844047
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||| ||||||||||||||||||  | || ||   |||||||||||||||||||| |||||||||||||| | |||||||||||    
T  22843916 tctaatttaagaggaaaaatgtaacatataaacataaaatatcaacggcacttgattatgaaaacttacttattattggagtgttggttgatttgaactt 22844015  T
Q  159 gaagaaattaggaatttcattgatttgagaga 190  Q
    ||||||||| || ||||   ||||||||||||    
T  22844016 gaagaaattggggatttggatgatttgagaga 22844047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 32109528 - 32109637
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggt-gtttgattatgaaaacttacttgttattggagtgttgttggatttgaact 157  Q
    ||||||||||||| |||||| |||||||||||||||||| || ||||||  |  |||||| ||| |||||||||||||||||| |||   |||||||  |    
T  32109528 tctaatttaagagaaaaaatgtaacatataaacataaaacgtcaatggtaatgagattatcaaagcttacttgttattggagttttgcctgatttgagtt 32109627  T
Q  158 tgaagaaatt 167  Q
    ||||||||||    
T  32109628 tgaagaaatt 32109637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 12785816 - 12785899
Alignment:
Q  84 atataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaatt 167  Q
    ||||||||||||||  | ||||||  |||||||||||||||||||||||||| ||||| ||   ||||||||||||| ||||||    
T  12785816 atataaacataaaatatcaatggtaattgattatgaaaacttacttgttattcgagtggtgggtgatttgaacttgatgaaatt 12785899  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 24630463 - 24630515
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgttt 111  Q
    ||||||||||||| ||| ||||||||||||||||||||  |||||||||||||    
T  24630463 tctaatttaagagaaaacatctaacatataaacataaactgttaatggtgttt 24630515  T

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Target: scaffold0489 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 7656 - 7505
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  7656 tctaatctaagaggaaaaatttaacatataaaaataaaaggttaatggtgtctgattttgaaaacttacttgttactggagtgttgtttgatttgaactt 7557  T
Q  159 g-aagaaattaggaatttcattgatttgagagagtttttggagatttgagatg 210  Q
    | ||||| || || ||||  |||||||||||||| |||||||||||| |||||    
T  7556 gtaagaattttgg-atttagttgatttgagagagattttggagattttagatg 7505  T

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Target: scaffold0121 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 4833 - 4680
Alignment:
Q  61 taatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttga 160  Q
    ||||||||||| ||||||||||||||| ||     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  4833 taatttaagagaaaaaatctaacatatcaa-----aaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtt-gatttgaagttga 4740  T
Q  161 agaaattaggaatttcattgatttgagagagtttttggagatttgagatgagaagtgagg 220  Q
    || ||||  | || |   ||||||||||||| |||| ||||||| ||||| ||| |||||    
T  4739 aggaattttggatctgggtgatttgagagagatttttgagattttagatgggaaatgagg 4680  T

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Target: scaffold0004 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 39421 - 39325
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaa 155  Q
    ||||||||||||  |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  39421 tctaatttaagacaaaaaatctaacatataaatataaaaggtaaatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaa 39325  T

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Target: scaffold0294 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 619 - 511
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaactt 158  Q
    |||||||||||||||||||| |||||||||||||| ||| || ||||||  | |||||||||||||| ||||||||||||||| ||   |||||||| ||    
T  619 tctaatttaagaggaaaaatgtaacatataaacatcaaatgtcaatggtaatggattatgaaaactttcttgttattggagtggtgaccgatttgaattt 520  T
Q  159 gaagaaatt 167  Q
    |||||||||    
T  519 gaagaaatt 511  T

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Target: scaffold0591 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 2299 - 2217
Alignment:
Q  59 tctaatttaagaggaaaaatctaacatataaacataaaaggttaatggtgtttgattatgaaaacttacttgttattggagtg 141  Q
    |||||| ||||||||||||| |||||||||||||||||| || |||| |  |  ||||||||||||||||| || ||||||||    
T  2299 tctaatataagaggaaaaatgtaacatataaacataaaatgtcaatgataatgaattatgaaaacttacttattgttggagtg 2217  T

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