View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2148_high_5 (Length: 408)
Name: NF2148_high_5
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 193 - 397
Target Start/End: Original strand, 48476805 - 48477011
Alignment:
| Q |
193 |
atggtaaattttaaaatttaccattcaaatttgaaatcataaataatagtcggttactggtcatagtcacatgtctcttgaaatgnnnnnnnnnnnnnnn |
292 |
Q |
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| T |
48476805 |
atggtaaattttaaaatttaccattcaaatttgaaatgataaataatagtcggttactggtcatagtcacatgtctcttgaaatgaaaaaataaaaaata |
48476904 |
T |
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| Q |
293 |
nnnnnga--agaaattttaaaattttccgaccttcagcttgtttgatccttttttattgttgaacaagctaaaattaaattagattaccacaaatgattc |
390 |
Q |
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| T |
48476905 |
aaaaagagaagaaattttaaaattttccgaccttcagcttgtttgatcctttcttattgttgaacaagctaaaattaaattagagtaccacaaatgattc |
48477004 |
T |
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| Q |
391 |
atctcac |
397 |
Q |
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||||||| |
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| T |
48477005 |
atctcac |
48477011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 48477011 - 48476805
Alignment:
| Q |
12 |
gtgagatgaatcatttgtggtaatctaatttaattttagcttgttcaacaataaaaaaggatcaaacaagctgaaggtcggaaaattttaaaatttct-- |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477011 |
gtgagatgaatcatttgtggtactctaatttaattttagcttgttcaacaataagaaaggatcaaacaagctgaaggtcggaaaattttaaaatttcttc |
48476912 |
T |
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| Q |
110 |
tcnnnnnnnnnnnnnnnnnnnncatttcaagagacatgtgactatgaccagtaaccgactattatttatgatttcaaatttgaatggtaaattttaaaat |
209 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48476911 |
tcttttttattttttattttttcatttcaagagacatgtgactatgaccagtaaccgactattatttatcatttcaaatttgaatggtaaattttaaaat |
48476812 |
T |
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| Q |
210 |
ttaccat |
216 |
Q |
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| T |
48476811 |
ttaccat |
48476805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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