View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2148_high_6 (Length: 247)
Name: NF2148_high_6
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 2906864 - 2907024
Alignment:
| Q |
69 |
catagttaactaactcgatacattttttacgagtaaaaatcatcataatattcgatttttacaacatttgttcacattgcgcaccaaccacttgcactgg |
168 |
Q |
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| T |
2906864 |
catagttaactaactggatacattttttacgagtaaaaatcatcgtaatattcgatttttatgacatttgttcacattgcgcaccaaccacttgcactgg |
2906963 |
T |
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| Q |
169 |
accgtgattaataaactttataccatatatatgcaggtaatgctaggtttattgacagctg |
229 |
Q |
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| T |
2906964 |
accgtgattaataaactttataccatatatatgcaggtaatgctaggtttattgacagctg |
2907024 |
T |
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Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 2906604 - 2906803
Alignment:
| Q |
1 |
ataatcttggacacggtattaatctgttaatgacaatttatttttggattaatgtgtgaataaaa-aatcatagttaactaactcgatacattttttacg |
99 |
Q |
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| T |
2906604 |
ataatcttggacacggtattaatctgttaatgacaatttatttttatattaatatgtgaataaaaaaatcatagttaattaactcgatacattttttacg |
2906703 |
T |
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| Q |
100 |
agtaaaaatcatcataatattcgatttttacaacatttgttcacattgcgcaccaaccacttgcactgga-ccgtgattaataaactttataccatatat |
198 |
Q |
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| T |
2906704 |
agtaaaaatcatcctaatatccgatttttactacatttgttcacattacgcaccaaccacttgtactggacccatgattattgaactttataccatatat |
2906803 |
T |
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