View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2148_high_8 (Length: 238)
Name: NF2148_high_8
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 47372821 - 47372608
Alignment:
| Q |
9 |
agcagagaaggtggtgaaaatgaaaacaatgaatcgttaaattggggtgagaacgtgaacttttgggtggctactacttcctaaaactatttatattttc |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47372821 |
agcaaagaaggtggtgaaaatgaaaacaatgaatcgttaaattggggtgagaacgtgaacttttgggtggctactacttcctaaaactatttatattttc |
47372722 |
T |
|
| Q |
109 |
ccatctatttatctgtattagtaaaaaacaagattatgtatttgtctctttgtgcattcaacctgctttgtttaatgaatttcccgtgtttgattttttc |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47372721 |
ccatctatttatctgtattaataaaaaacaagattatgtatttgtttttttgtgcattcaacctgctttgtttaatgaatttcccgtgtttgattttttc |
47372622 |
T |
|
| Q |
209 |
tcacataaactatg |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47372621 |
tcacataaactatg |
47372608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 47386204 - 47386341
Alignment:
| Q |
75 |
gtggctactacttcctaaaactatttatattttcccatctatttatct--gtattagtaaaaaa--caagatt---atgtatttgtctcttt-----gtg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | |||||| ||||||| ||||||| || | |||||| ||| ||| |
|
|
| T |
47386204 |
gtggctactacttcctaaaactatttatattttcagttctatttatatatgtattaataaaaaatacaagatttaaatatttttgtcctttttgtgcgtg |
47386303 |
T |
|
| Q |
163 |
cattcaacctgctttgtttaatgaatttcccgtgtttg |
200 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||| |
|
|
| T |
47386304 |
cattcatcttgttttgtttaatgaatttcccgtgtttg |
47386341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 47386143 - 47386187
Alignment:
| Q |
14 |
agaaggtggtgaaaatgaaaacaatgaatcgttaaattggggtga |
58 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
47386143 |
agaaggtggtgaaaatgaaaacaaagaatttttaaattggggtga |
47386187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University