View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2148_low_1 (Length: 632)
Name: NF2148_low_1
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 22 - 613
Target Start/End: Complemental strand, 42579003 - 42578415
Alignment:
| Q |
22 |
accagcgaagttccaatcacagaatcaagaagttacatatacaacaacaactcaaagcaaaaacaatggtccaaaacctcttcatcatcttcttccattt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42579003 |
accagcgaagttccaatcacagaatcaagaagttacatatacaacaac---tcaaagcaaaaacaatggtccaaaacctcttcatcatcttcttccattt |
42578907 |
T |
|
| Q |
122 |
caacccactcttctctctcaagcctcaaacatgctctccctgaaaaccctcacatctaccctttctccgatatctcatccgccaccaataacttctctgc |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578906 |
caactcactcttctctctcaagcctcaaacatgctctccctgaaaaccctcacatctaccctttctccgatatctcatccgccaccaataacttctctgc |
42578807 |
T |
|
| Q |
222 |
caaccgtctctcctccaactccttccgctgttctcttcacaaccgcgacgtcgttatttttcaacggaaattccgtcgccaaattgacctccctgagctt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42578806 |
caaccgtctctcctccaactccttccgctgttctcttcacaaccgcgacgtcgttgtttttcaacggaaattccgtcgccaaattcacctccctgagctt |
42578707 |
T |
|
| Q |
322 |
cgtgatcgacttgctcttatctgccggagtcaccatagtagtctcgtcaaacttctcggagcttctgtctccgggagctacatttatcttgtttatgact |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578706 |
cgtgatcgacttgctcttatctgccggagtcaccatagtagtctcgtcaaacttctcggagcttctgtctccgggagctacatttatcttgtttatgact |
42578607 |
T |
|
| Q |
422 |
ttgttcccggtgctaatctttctgattgtcttcgtaatcgtcggaatcctagcttcaccgatcttaatacgtggacttcgaggatgctgattgcttccga |
521 |
Q |
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| T |
42578606 |
ttgttcccggtgctaatctttctgattgtcttcgtaatcgtcggaatcctagcttcaccgatcttaatacgtggacttcgaggatgctgattgcttccga |
42578507 |
T |
|
| Q |
522 |
tcttgctcacggtcttgattacgttcataattttgctggttctggttctggttttgttcataatcatatcaaaagctctagcatcatcgttg |
613 |
Q |
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| T |
42578506 |
tcttgctcacggtcttgattacgttcataattttgctggttctggttctggttttgttcataatcatatcaaaagctctagcatcatcgttg |
42578415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 143 - 595
Target Start/End: Original strand, 35016752 - 35017187
Alignment:
| Q |
143 |
gcctcaaacatgctctccctgaaaaccctcacatctaccctttctccgatatctcatccgccaccaataacttctctgccaaccgtctctcctccaactc |
242 |
Q |
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||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
35016752 |
gcctccaacatactcttcctgaaaaccctcacatgtaccctttctccgatatctcaaccgccaccaataacttctctgcaaactgtctctcctccaactc |
35016851 |
T |
|
| Q |
243 |
cttccgctgttctcttcacaaccgcgacgtcgttatttttcaacggaaattccgtcgccaaattgacctccctgagcttcgtgatcgacttgctcttatc |
342 |
Q |
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||||||||||| ||| |||||||||||| |||| |||| ||||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35016852 |
cttccgctgttgtctccacaaccgcgacatcgtcgttttccaacg-aaattccgccatcaaattgacctctctgagcttcgtgatcgacttgctcttatc |
35016950 |
T |
|
| Q |
343 |
tgccggagtcaccatagtagtctcgtcaaacttctcggagcttctgtctccgggagctacatttatcttgtttatgactttgttcccggtgctaatcttt |
442 |
Q |
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|||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
35016951 |
tgccggagccaccatagcagtcttgtgaaactcctcggagcttctgtctccgggagctacatttatattgtttatgaatttgtacccggtgctaatcttt |
35017050 |
T |
|
| Q |
443 |
ctgattgtcttcgtaatcgtcggaatcctagcttcaccgatcttaatacgtggacttcgaggatgctgattgcttccgatcttgctcacggtcttgatta |
542 |
Q |
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|||||| || ||||||||||||||||||||||| ||||| ||| ||||| | || ||||||||||||||| ||||||||||||| |
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| T |
35017051 |
ctgatt-----------------aaccctagcttcaccgatcttaatacatggacgtcgcggatgttaatcgcttccgatcttgcttacggtcttgatta |
35017133 |
T |
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| Q |
543 |
cgttcataattttgctggttctggttctgg-ttttgttcataatcatatcaaaa |
595 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35017134 |
tgttcacaattttgctggttctggttctggtttttgttcataatcatatcaaaa |
35017187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 35016124 - 35016251
Alignment:
| Q |
28 |
gaagttccaatcacagaatcaagaagttacatatacaacaacaactcaaagcaaaaacaatggtccaaaacctctt---catcatcttcttccatttcaa |
124 |
Q |
| |
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||||||||||||||| |||||||||||||| |||| |||||||||||||| || ||||||||||||||||| |||| |||||| |||||| ||||| | |
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| T |
35016124 |
gaagttccaatcacataatcaagaagttacttataaaacaacaactcaaaacataaacaatggtccaaaacatcttcaccatcattttcttcaatttcca |
35016223 |
T |
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| Q |
125 |
cccactcttctctctcaagcctcaaaca |
152 |
Q |
| |
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||||||||||| ||||||||||| |||| |
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| T |
35016224 |
cccactcttctttctcaagcctccaaca |
35016251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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