View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2148_low_11 (Length: 231)
Name: NF2148_low_11
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2065254 - 2065486
Alignment:
| Q |
1 |
tcaattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcaccc |
100 |
Q |
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| T |
2065254 |
tcaattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcacca |
2065353 |
T |
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| Q |
101 |
gcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaatata---nnnnnnnnaacactatggatagaggaacgatggat |
196 |
Q |
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| T |
2065354 |
gcagaaggaaaaaaaatgttgctttctttgccaaatctcacgacagtgctgcaattaatatatttttttttataacactatggatagaggaacgatggat |
2065453 |
T |
|
| Q |
197 |
agaagccatgaatagaggaacgatggtgtttga |
229 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2065454 |
agaagccatgaatagaggaacgatggtgtttga |
2065486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 12422927 - 12422771
Alignment:
| Q |
3 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcacccgc |
102 |
Q |
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| T |
12422927 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatgataaaaataaattgctgctttcacccaattcactagc |
12422828 |
T |
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| Q |
103 |
agaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaat |
158 |
Q |
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| T |
12422827 |
agaaggaaaaaaattgttgctttctttgccaaatctcacgacggtgttgcaattaat |
12422771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 30626892 - 30627049
Alignment:
| Q |
3 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataa-aaattgctgctttcacccaattcacccg |
101 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| | |
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| T |
30626892 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatgataaaaaatagattgctgctttcacccaattcactag |
30626991 |
T |
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| Q |
102 |
cagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaat |
158 |
Q |
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| T |
30626992 |
cagaaggaaaaaaattgttgctttctttgccaaatctcacgacagtgttgcaattaat |
30627049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 38460326 - 38460177
Alignment:
| Q |
3 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaac----tatgataaataaaaattgctgctttcacccaattcac |
98 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
38460326 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatatatgataaaaataaattgctgctttcacccaattcac |
38460227 |
T |
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| Q |
99 |
ccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtg |
147 |
Q |
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| T |
38460226 |
tagcagaaggaaaaaatttgttgctttctttgccaaatctcacgacagtg |
38460177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 38459830 - 38459891
Alignment:
| Q |
3 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactat |
64 |
Q |
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| T |
38459830 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactat |
38459891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 38460748 - 38460834
Alignment:
| Q |
62 |
tatgataaataaaaattgctgctttcacccaattcacccgcagaaggnnnnnnnt-gttgctttctttgccaaatctcacgacagtg |
147 |
Q |
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||||||||| | ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38460748 |
tatgataaaaataaattgctgctttcacccaattcactagcagaaggaaaaaatttgttgctttctttgccaaatctcacgacagtg |
38460834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 8719342 - 8719185
Alignment:
| Q |
3 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaac----tatgataaataaaaattgctgctttcacccaattcac |
98 |
Q |
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||||| || ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
8719342 |
aattacaattgttggagaagggaactgaaattgagaacaataatggggagaaatggaactatatatgataaaaataaattgctgctttcacccaattcac |
8719243 |
T |
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| Q |
99 |
ccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaatt |
155 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
8719242 |
tagcagaaggaaaaaaattgttgctttctttgccaaatctcacgacagtgttgcaatt |
8719185 |
T |
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