View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2148_low_12 (Length: 206)

Name: NF2148_low_12
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2148_low_12
NF2148_low_12
[»] chr3 (26 HSPs)
chr3 (1-141)||(1901740-1901880)
chr3 (1-141)||(1911186-1911326)
chr3 (1-65)||(462291-462355)
chr3 (1-67)||(7867597-7867663)
chr3 (3-67)||(32795955-32796019)
chr3 (1-67)||(25959430-25959496)
chr3 (1-67)||(31326825-31326891)
chr3 (1-65)||(981587-981651)
chr3 (1-67)||(34607807-34607873)
chr3 (1-67)||(50294012-50294078)
chr3 (1-67)||(1295449-1295515)
chr3 (1-63)||(41717380-41717442)
chr3 (1-67)||(44593083-44593149)
chr3 (1-62)||(29800442-29800503)
chr3 (137-179)||(1894692-1894734)
chr3 (137-179)||(1904138-1904180)
chr3 (137-179)||(2934082-2934124)
chr3 (77-135)||(31339734-31339792)
chr3 (17-67)||(32981009-32981059)
chr3 (1-67)||(46473245-46473311)
chr3 (18-63)||(16267799-16267844)
chr3 (1-66)||(43409254-43409319)
chr3 (77-113)||(7729591-7729627)
chr3 (8-44)||(31176349-31176385)
chr3 (1-37)||(32656092-32656128)
chr3 (31-67)||(47773866-47773902)
[»] chr4 (21 HSPs)
chr4 (1-67)||(46567046-46567112)
chr4 (1-67)||(12638941-12639007)
chr4 (1-67)||(55510976-55511042)
chr4 (1-66)||(28676043-28676108)
chr4 (12-67)||(11997778-11997833)
chr4 (3-66)||(33438164-33438227)
chr4 (8-66)||(40847491-40847549)
chr4 (1-62)||(16508870-16508931)
chr4 (1-67)||(37977232-37977298)
chr4 (30-66)||(32621763-32621799)
chr4 (3-66)||(23836989-23837052)
chr4 (31-66)||(41010060-41010095)
chr4 (12-67)||(54801125-54801180)
chr4 (31-65)||(48783941-48783975)
chr4 (21-66)||(7795137-7795182)
chr4 (34-66)||(23094525-23094557)
chr4 (5-60)||(22071619-22071674)
chr4 (31-65)||(24209689-24209723)
chr4 (1-67)||(51389433-51389499)
chr4 (18-63)||(26440797-26440842)
chr4 (77-113)||(13029086-13029122)
[»] scaffold0166 (1 HSPs)
scaffold0166 (1-67)||(34952-35018)
[»] chr7 (16 HSPs)
chr7 (1-67)||(2469809-2469875)
chr7 (1-66)||(18157074-18157139)
chr7 (3-67)||(9031326-9031390)
chr7 (1-64)||(43107729-43107792)
chr7 (1-67)||(25940555-25940621)
chr7 (1-67)||(43079517-43079583)
chr7 (1-66)||(30941294-30941359)
chr7 (1-66)||(27688754-27688819)
chr7 (5-67)||(35072133-35072195)
chr7 (1-54)||(43444745-43444798)
chr7 (1-67)||(6655505-6655571)
chr7 (5-67)||(35098475-35098537)
chr7 (33-67)||(8061634-8061668)
chr7 (1-67)||(8792488-8792551)
chr7 (8-67)||(10591035-10591095)
chr7 (5-65)||(22692201-22692261)
[»] chr5 (21 HSPs)
chr5 (1-67)||(24792569-24792635)
chr5 (1-66)||(9636047-9636112)
chr5 (1-67)||(91332-91398)
chr5 (3-67)||(36581355-36581419)
chr5 (3-66)||(7144694-7144757)
chr5 (3-67)||(28904111-28904179)
chr5 (3-67)||(28940506-28940574)
chr5 (17-67)||(15639518-15639568)
chr5 (1-66)||(13734249-13734314)
chr5 (1-66)||(582758-582823)
chr5 (3-66)||(19437376-19437439)
chr5 (22-67)||(38387848-38387893)
chr5 (31-67)||(20040921-20040957)
chr5 (1-67)||(6865675-6865741)
chr5 (8-66)||(26627454-26627512)
chr5 (21-67)||(32732004-32732050)
chr5 (1-62)||(36624435-36624496)
chr5 (77-136)||(4930877-4930936)
chr5 (8-67)||(5698216-5698275)
chr5 (8-67)||(26626707-26626766)
chr5 (1-62)||(39595391-39595452)
[»] chr1 (27 HSPs)
chr1 (1-67)||(48872496-48872562)
chr1 (1-67)||(27352747-27352813)
chr1 (1-65)||(51339590-51339654)
chr1 (1-67)||(25061850-25061916)
chr1 (1-67)||(44730761-44730827)
chr1 (1-66)||(4604646-4604711)
chr1 (1-58)||(30530471-30530528)
chr1 (3-67)||(36930644-36930708)
chr1 (3-67)||(49621480-49621544)
chr1 (1-67)||(50527945-50528011)
chr1 (1-66)||(43611971-43612036)
chr1 (1-63)||(25098683-25098742)
chr1 (3-67)||(16658558-16658626)
chr1 (8-67)||(51172195-51172254)
chr1 (1-63)||(32821752-32821814)
chr1 (17-67)||(30687185-30687235)
chr1 (1-67)||(40595942-40596008)
chr1 (22-62)||(5043186-5043226)
chr1 (5-67)||(40605308-40605371)
chr1 (3-67)||(11460913-11460977)
chr1 (31-63)||(51571665-51571697)
chr1 (5-67)||(21255672-21255735)
chr1 (1-66)||(16987564-16987630)
chr1 (25-63)||(44959074-44959112)
chr1 (34-67)||(38019391-38019424)
chr1 (3-67)||(42299075-42299140)
chr1 (31-67)||(25239124-25239160)
[»] chr8 (12 HSPs)
chr8 (1-66)||(1796600-1796665)
chr8 (1-63)||(5782905-5782967)
chr8 (1-67)||(6005061-6005127)
chr8 (1-66)||(36740429-36740494)
chr8 (1-66)||(32725671-32725736)
chr8 (17-67)||(12045541-12045591)
chr8 (22-67)||(69514-69559)
chr8 (3-67)||(44380502-44380566)
chr8 (17-67)||(42443239-42443289)
chr8 (5-62)||(20284828-20284886)
chr8 (5-62)||(21071457-21071515)
chr8 (38-66)||(9314566-9314594)
[»] chr2 (18 HSPs)
chr2 (1-67)||(40951307-40951373)
chr2 (1-64)||(19668078-19668141)
chr2 (1-64)||(5167633-5167696)
chr2 (1-57)||(13553260-13553316)
chr2 (1-63)||(30856924-30856986)
chr2 (1-66)||(4842408-4842473)
chr2 (3-67)||(15283137-15283201)
chr2 (5-67)||(21805674-21805736)
chr2 (1-59)||(10288269-10288327)
chr2 (25-62)||(13553310-13553347)
chr2 (22-67)||(19637365-19637410)
chr2 (22-67)||(19835958-19836003)
chr2 (1-57)||(35792354-35792410)
chr2 (1-67)||(36763407-36763474)
chr2 (21-66)||(305857-305902)
chr2 (3-67)||(43791678-43791743)
chr2 (77-134)||(44719099-44719156)
chr2 (34-66)||(32128279-32128311)
[»] chr6 (7 HSPs)
chr6 (1-66)||(8173201-8173266)
chr6 (1-67)||(32730006-32730072)
chr6 (1-67)||(16533147-16533214)
chr6 (1-67)||(21443805-21443871)
chr6 (22-66)||(25567382-25567426)
chr6 (22-66)||(25561831-25561875)
chr6 (22-66)||(26101345-26101389)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-67)||(440835-440901)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-66)||(16483-16548)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-66)||(56296-56361)
[»] scaffold0318 (1 HSPs)
scaffold0318 (5-66)||(18179-18241)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 7e-51; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 1901880 - 1901740
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctctnnnnnnnnngtttctaaaatgtttgtgtaggca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         ||||||||||||||||||||||||    
T  1901880 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctctaaaaaaaaagtttctaaaatgtttgtgtaggca 1901781  T
Q  101 caagctcacacattcaccaacatacatccgtccctggatat 141  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  1901780 caagctcacacattcaccgacatacatcggtccctggatat 1901740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 1911326 - 1911186
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctctnnnnnnnnngtttctaaaatgtttgtgtaggca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         ||||||||||||||||||||||||    
T  1911326 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctctaaaaaaaaagtttctaaaatgtttgtgtaggca 1911227  T
Q  101 caagctcacacattcaccaacatacatccgtccctggatat 141  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  1911226 caagctcacacattcaccgacatacatcggtccctggatat 1911186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 462355 - 462291
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 65  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  462355 tgaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7867663 - 7867597
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7867663 tgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 7867597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 32795955 - 32796019
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32795955 aaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 32796019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25959496 - 25959430
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  25959496 tgaaaagagagaaaatgaaagttgtcaaataggttgtatcaaatggttgttcaaatatcattgctct 25959430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31326825 - 31326891
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31326825 tgaaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 31326891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 981587 - 981651
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 65  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  981587 tgaaaagagagaaaatgaaggttgtcaaataggctgtactaaatggttgttcaaatatcattgct 981651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34607873 - 34607807
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  34607873 tgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcgttgctct 34607807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 50294078 - 50294012
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  50294078 tgaaaagagagaaaaagaaagttgtcaaataagttgtaccaaatggttgttaaaatatcattgctct 50294012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1295449 - 1295515
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||| |||||| |||||||||||||   |||||| ||||||||||||||||||||||||||||    
T  1295449 tgaaaagatagaaaaagaaggttgtcaaaattgttgtagcaaatggttgttcaaatatcattgctct 1295515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41717380 - 41717442
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||||| |||||||||||||    
T  41717380 tgaaaagagagaaaaagaagattgtcaaatagattataccaaatggttgatcaaatatcattg 41717442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44593083 - 44593149
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| |||||||| ||||||||||||| | ||||||||||||| || ||||||||||||||||||    
T  44593083 tgaaaatagagaaaatgaaggttgtcaaaaaagttgtaccaaatgattattcaaatatcattgctct 44593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29800503 - 29800442
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 62  Q
    ||||||||||||||| |||| || ||||||||||||||||||||  ||||||||||||||||    
T  29800503 tgaaaagagagaaaaagaagattttcaaataggttgtaccaaataattgttcaaatatcatt 29800442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 1894734 - 1894692
Alignment:
Q  137 gatatgtttctgtattagttccttttttcagtaattaataata 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1894734 gatatgtttctgtattagttcctattttcagtaattaataata 1894692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 1904180 - 1904138
Alignment:
Q  137 gatatgtttctgtattagttccttttttcagtaattaataata 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1904180 gatatgtttctgtattagttcctattttcagtaattaataata 1904138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 2934082 - 2934124
Alignment:
Q  137 gatatgtttctgtattagttccttttttcagtaattaataata 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  2934082 gatatgtttctgtattagttcctattttcagtaattaataata 2934124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 31339792 - 31339734
Alignment:
Q  77 gtttctaaaatgtttgtgtaggcacaagctcacacattcaccaacatacatccgtccct 135  Q
    ||||||||||  ||||||||||||||||| |||||||  ||||||||||||||||||||    
T  31339792 gtttctaaaaattttgtgtaggcacaagcccacacatgaaccaacatacatccgtccct 31339734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 32981059 - 32981009
Alignment:
Q  17 gaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  32981059 gaaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctct 32981009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46473245 - 46473311
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||   | ||||||| | | |||||| ||||||||||||||||||||||| ||||    
T  46473245 tgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcattactct 46473311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 16267844 - 16267799
Alignment:
Q  18 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||||    
T  16267844 aaggttgtcaaaaatgttgtaccaaatgattgttcaaatattattg 16267799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43409319 - 43409254
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||  ||| ||||||||||| || ||| ||||  |||||||||||||| |||||    
T  43409319 tgaaaagagagaaaaaaaagattgtcaaatagattatactaaataattgttcaaatatcaatgctc 43409254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 7729627 - 7729591
Alignment:
Q  77 gtttctaaaatgtttgtgtaggcacaagctcacacat 113  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  7729627 gtttctaaaatttttgtgtaggcacaagcccacacat 7729591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 31176385 - 31176349
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgtaccaaat 44  Q
    |||||||||||| |||||||||||||||||| |||||    
T  31176385 agagaaaaggaaagttgtcaaataggttgtatcaaat 31176349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32656092 - 32656128
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgt 37  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  32656092 tgaaaagaaagaaaaggaaggtcgtcaaataggttgt 32656128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 47773902 - 47773866
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  47773902 aggttgtaccaaatggttgttcaaatatgattactct 47773866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46567046 - 46567112
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46567046 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 46567112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12638941 - 12639007
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  12638941 tgaaaagagagaaaatgaaggttgtcaaataggttgtaacaaatagttgttcaaatatcatttctct 12639007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 55510976 - 55511042
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  55510976 tgaaaatagagaaaaggaaagttttcaaataagttgtaccaaatggttgttcaaatatcattgctct 55511042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28676108 - 28676043
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  28676108 tgaaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgtttaaatatcattgctc 28676043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 11997778 - 11997833
Alignment:
Q  12 aaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  11997778 aaaagaaaggatgtcaaataggttgtaccaaatggttgttcaaatatcattactct 11997833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 33438164 - 33438227
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||||||| ||||||||||||||    
T  33438164 aaaagagagaaaatgaaggttatcaaaaaagttgtaccaaatggttgtttaaatatcattgctc 33438227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 40847491 - 40847549
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  40847491 agagaaaaagaaggttgtcaaaaaggttgtgtcaaatggttgttcaaatatcattgctc 40847549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16508931 - 16508870
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 62  Q
    ||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||| ||||    
T  16508931 tgaaaagagagaaaatgaaggttgtcaagtaggttgtaccaaattattgttcaaatagcatt 16508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37977232 - 37977298
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||   ||  |||||||| | |||||||||||||||||||||||||||||||||||    
T  37977232 tgaaaagagagaaagaaaaaattgtcaaaaatgttgtaccaaatggttgttcaaatatcattgctct 37977298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 32621763 - 32621799
Alignment:
Q  30 taggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  32621763 taggttgtaccaaatggttgttcaaatatcattgctc 32621799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 23837052 - 23836989
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||| |||  || ||||||| ||||||||||||| ||||| ||||||||||||||    
T  23837052 aaaagagagaaaaagaaaattatcaaataagttgtaccaaatgattgtttaaatatcattgctc 23836989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 41010095 - 41010060
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  41010095 aggttgtaccaaatggttgttcaaatatcattgctc 41010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 54801125 - 54801180
Alignment:
Q  12 aaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||| |||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  54801125 aaaatgaaggttgtcaaataaattgtaccaaataattgttcaaatatcattgctct 54801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 48783941 - 48783975
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattgct 65  Q
    |||||||||||||||||||||||||||||||||||    
T  48783941 aggttgtaccaaatggttgttcaaatatcattgct 48783975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 7795137 - 7795182
Alignment:
Q  21 gttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||    
T  7795137 gttgtcataaaggttgtatcaaatggttgttcaaatatcattgctc 7795182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 23094525 - 23094557
Alignment:
Q  34 ttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||||||    
T  23094525 ttgtaccaaatggttgttcaaatatcattgctc 23094557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 22071619 - 22071674
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 60  Q
    ||||||||||| ||| ||||||||| | |||||||||||||||||| | |||||||    
T  22071619 aagagagaaaaagaaagttgtcaaacaagttgtaccaaatggttgtactaatatca 22071674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 24209723 - 24209689
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattgct 65  Q
    ||||||||||||||||||||| |||||||||||||    
T  24209723 aggttgtaccaaatggttgtttaaatatcattgct 24209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 51389433 - 51389499
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||   | ||||||| | | |||||| ||||||||||||||||||||| ||||||    
T  51389433 tgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcactgctct 51389499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 26440797 - 26440842
Alignment:
Q  18 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||||||||||| |||||| ||||| || ||||||||||||||    
T  26440797 aaggttgtcaaatagattgtacaaaatgattcttcaaatatcattg 26440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 13029086 - 13029122
Alignment:
Q  77 gtttctaaaatgtttgtgtaggcacaagctcacacat 113  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  13029086 gtttctaaaatttttgtgtaggcacaagcccacacat 13029122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34952 - 35018
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34952 tgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 35018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2469809 - 2469875
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469809 tgaaaatagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 2469875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18157139 - 18157074
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18157139 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgctc 18157074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 9031326 - 9031390
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9031326 aaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 9031390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43107729 - 43107792
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgc 64  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43107729 tgaaaagaaagaaaaggaaggttgttaaataggttgtaccaaatggttgttcaaatatcattgc 43107792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25940621 - 25940555
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  25940621 tgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcattgctct 25940555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43079583 - 43079517
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  43079583 tgaaaagagagaaaagaaaggttgtcaaataagttttaccaaatggttgttcaaatatcattgctct 43079517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30941294 - 30941359
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  30941294 tgaaaaaagagaaaaggaaggttgtcaaataggttgtactaaatggttgttcaaatatgattgctc 30941359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27688754 - 27688819
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||| |||||||||||||||    
T  27688754 tgaaaagagagaaaaggaaggttgtcaaatagattgtaccaaataattgtacaaatatcattgctc 27688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 35072195 - 35072133
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  35072195 aagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaaatatcattgctct 35072133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43444745 - 43444798
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaa 54  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  43444745 tgaaaagggagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaa 43444798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6655571 - 6655505
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||| |||| |||| |||||||| || |||||||||||||||||| |||||||||||||||    
T  6655571 tgaaaagagataaaaagaagattgtcaaaaagattgtaccaaatggttgtttaaatatcattgctct 6655505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 35098537 - 35098475
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||| |||| |||||||| |||||||||||||| ||||||||| ||||||||||||    
T  35098537 aagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaattatcattgctct 35098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 8061668 - 8061634
Alignment:
Q  33 gttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||||||||||||| ||||||||    
T  8061668 gttgtaccaaatggttgttcaaatattattgctct 8061634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8792551 - 8792488
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||   | ||||||| | | |||||| ||||||||||||||||||||||| ||||    
T  8792551 tgaaaagagagaaaa---aagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactct 8792488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 10591095 - 10591035
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||  |||||||| | | ||||| ||||||| ||||||||||||||||||||||    
T  10591095 agagaaaaggtgggttgtcataaaagttgtcaccaaatagttgttcaaatatcattgctct 10591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 22692201 - 22692261
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 65  Q
    |||||||||||| ||| |||||||| || || ||| |||| ||||||||||||| ||||||    
T  22692201 aagagagaaaagaaagattgtcaaaaagattatactaaatagttgttcaaatatgattgct 22692261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24792569 - 24792635
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24792569 tgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 24792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9636112 - 9636047
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9636112 tgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 9636047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 91332 - 91398
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  91332 tgaaaagagagaaaagaaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctct 91398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 36581419 - 36581355
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36581419 aaaagagaaaaaatgaaggttgtcaaataggttgtacaaaatggttgttcaaatatcattgctct 36581355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 7144694 - 7144757
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  7144694 aaaagagagaaaaagaaggttgtcaaaaaggttgtatcaaatggttgctcaaatatcattgctc 7144757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 28904111 - 28904179
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaa----tggttgttcaaatatcattgctct 67  Q
    |||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  28904111 aaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctct 28904179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 28940506 - 28940574
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaa----tggttgttcaaatatcattgctct 67  Q
    |||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  28940506 aaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctct 28940574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 15639518 - 15639568
Alignment:
Q  17 gaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15639518 gaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctct 15639568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13734314 - 13734249
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||  |||||||    
T  13734314 tgaaaagagagaaaaggaaagttgtcaaatagattgtaccaaatggttgttcatatacaattgctc 13734249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 582823 - 582758
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||| || ||||||||||||| |  |||||||||||| ||||||||||||||||||||    
T  582823 tgaaaagagagagaaagaaggttgtcaaaaatcttgtaccaaatgattgttcaaatatcattgctc 582758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 19437376 - 19437439
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||| |||||||||||| | ||||||| |||| ||||||||||||||| |||||    
T  19437376 aaaagagagaaaagaaaggttgtcaaaaatgttgtactaaatagttgttcaaatatcagtgctc 19437439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 38387848 - 38387893
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  38387848 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctct 38387893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 20040921 - 20040957
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||||||||||||||||||||||||    
T  20040921 aggttgtaccaaatggttgttcaaatatcattgctct 20040957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6865741 - 6865675
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||  || |||||||||||| || || ||||| ||||||||||||| ||||||||    
T  6865741 tgaaaagagagaaaataaaagttgtcaaatagattatatcaaatagttgttcaaatattattgctct 6865675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26627454 - 26627512
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||| |||||||||||   | |||||||||||| |||||||||||||||||||||    
T  26627454 agagaaaaagaaggttgtcatgaaagttgtaccaaatagttgttcaaatatcattgctc 26627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 32732050 - 32732004
Alignment:
Q  21 gttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||    
T  32732050 gttgtcataaagattgtaccaaatggttgttcaaatatcattgctct 32732004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36624435 - 36624496
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 62  Q
    ||||||||||||||| |||  ||||||||||  ||||| |||||| ||||||||||||||||    
T  36624435 tgaaaagagagaaaatgaaaattgtcaaataaattgtatcaaatgcttgttcaaatatcatt 36624496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 4930877 - 4930936
Alignment:
Q  77 gtttctaaaatgtttgtgtaggcacaagctcacacattcaccaacatacatccgtccctg 136  Q
    ||||||||||| |||||| ||||||| || ||||||| || |||||||||| ||||||||    
T  4930877 gtttctaaaatttttgtggaggcacatgcccacacatccaacaacatacattcgtccctg 4930936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 5698275 - 5698216
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||| |||||||||||   | ||||||||||||| |||||| ||||||||||||||    
T  5698275 agagaaaaagaaggttgtcatgaaagttgtaccaaatgattgttctaatatcattgctct 5698216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 26626766 - 26626707
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||  ||||||||||   | |||||| ||||||||||||||||||||||||||||    
T  26626766 agagaaaaaaaaggttgtcatgaaagttgtaacaaatggttgttcaaatatcattgctct 26626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39595391 - 39595452
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 62  Q
    |||||||||||||||   | ||||||| | | |||||| |||||||||||||||||||||||    
T  39595391 tgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcatt 39595452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48872496 - 48872562
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48872496 tgaaaagagagaaaaggaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctct 48872562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27352747 - 27352813
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27352747 tgaaaagagagaaaagaaaggttgtcgaataggttgtaccaaatggttgttcaaatatcattgctct 27352813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51339654 - 51339590
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 65  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51339654 tgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgct 51339590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25061850 - 25061916
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  25061850 tgaaaagagagaaaaagaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctct 25061916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44730761 - 44730827
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44730761 tgaaaaaagagaaaaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctct 44730827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4604646 - 4604711
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  4604646 tgaaaagagagaaaaagaaggttgtcaaacaggttgtaccaaatcgttgttcaaatatcattgctc 4604711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30530528 - 30530471
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatat 58  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30530528 tgaaaagagagaaaaggaaagttgtcaaataggttgtaccaaatggttgttcaaatat 30530471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 36930708 - 36930644
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  36930708 aaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgttcaaatatcattgctct 36930644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 49621480 - 49621544
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  49621480 aaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 49621544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 50528011 - 50527945
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  50528011 tgaaaagagagaaaaagaaggttgtcaaatagattgtagcaaatggttgttcaaatatgattgctct 50527945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43612036 - 43611971
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  43612036 tgaaaagagagaagaggaagattatcaaataggttgtaccaaatggttggtcaaatatcattgctc 43611971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25098742 - 25098683
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  25098742 tgaaaagagagaaaaggaaggttgtcaa---ggttgtaccaaatggttgttcaaatatcattg 25098683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 16658558 - 16658626
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaa----tggttgttcaaatatcattgctct 67  Q
    |||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  16658558 aaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctct 16658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 51172254 - 51172195
Alignment:
Q  8 agagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||| ||| ||||||||||| |||||||||||| |||||||||||||||||||||    
T  51172254 agagaaaagaaagattgtcaaatagattgtaccaaatgattgttcaaatatcattgctct 51172195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32821752 - 32821814
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||||||||||| ||| ||||||||||| ||| || ||||||||||||||||||||||||    
T  32821752 tgaaaagagagaaaatgaatgttgtcaaataagttttatcaaatggttgttcaaatatcattg 32821814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 30687185 - 30687235
Alignment:
Q  17 gaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  30687185 gaaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctct 30687235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40596008 - 40595942
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||  |   |||||||| |||||||| ||||||||||||||||||||||||||||    
T  40596008 tgaaaagagagaaaaaaattattgtcaaaaaggttgtatcaaatggttgttcaaatatcattgctct 40595942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 5043186 - 5043226
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcatt 62  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  5043186 ttgtcaaataagttgtaccaaatggttgttcaaatatcatt 5043226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 40605371 - 40605308
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||| ||||||||||| | | ||||| | ||||||||||||||||||||||||||||    
T  40605371 aagagagaaaaagaaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctct 40605308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 11460913 - 11460977
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| ||| || ||||||||||||| | |||||| ||||| ||||||||||||||||| ||||    
T  11460913 aaaagaaagagaaagaaggttgtcaaaaaagttgtatcaaattgttgttcaaatatcattcctct 11460977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 51571665 - 51571697
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattg 63  Q
    |||||||||||||||||||||||||||||||||    
T  51571665 aggttgtaccaaatggttgttcaaatatcattg 51571697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 21255735 - 21255672
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||| | ||||||||| | | ||||| | ||||||||||||||||||||||||||||    
T  21255735 aagagagaaaaaggaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctct 21255672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16987564 - 16987630
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||| | ||||||||| | |  |||| | |||||||||||||||||||||||||||    
T  16987564 tgaaaagagagaaaaaggaggttgtcatagaaattgttagcaaatggttgttcaaatatcattgctc 16987630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 44959074 - 44959112
Alignment:
Q  25 tcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  44959074 tcaaataagttgtatcaaatggttgttcaaatatcattg 44959112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 38019424 - 38019391
Alignment:
Q  34 ttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||||||||||||||| ||||||    
T  38019424 ttgtaccaaatggttgttcaaatatcactgctct 38019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 42299140 - 42299075
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaatag-gttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |||| |||||||| |  ||||||| ||||  |||||||||||||||||||||    
T  42299140 aaaagagagaaaaagaagattgtcaaaaaatgttgtactaaataattgttcaaatatcattgctct 42299075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 25239160 - 25239124
Alignment:
Q  31 aggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  25239160 aggttgtacccaatagttgttcaaatatcattgctct 25239124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1796600 - 1796665
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1796600 tgaaaagagagaaaaggaaggttgtcaaataggttgtaacaaatggttgttcaaatatcattgctc 1796665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5782905 - 5782967
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5782905 tgaaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattg 5782967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6005061 - 6005127
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  6005061 tgaaaagagagaaaaggaaagttgtcaaataagttgtaccaaatggttgttcaaacatcattgctct 6005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36740429 - 36740494
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  36740429 tgaaaagagagaaaatgaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 36740494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32725736 - 32725671
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||||| || ||| |||| |||||| ||||||||||||||    
T  32725736 tgaaaagagagaaaaggaaggttgtcaaatagattatactaaatagttgtttaaatatcattgctc 32725671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 12045591 - 12045541
Alignment:
Q  17 gaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  12045591 gaaggttgtcaaaaaggttataccaaatggttgttcaaatatcattgctct 12045541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 69559 - 69514
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||    
T  69559 ttgtcaaataggttgtatcaaatggttgttcaaatagcattgctct 69514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 44380566 - 44380502
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||| ||||||||| |||||||||||| ||||||||| |||| |||||| |||||||| ||||||    
T  44380566 aaaaaagagaaaagaaaggttgtcaaaaaggttgtactaaatagttgtttaaatatcagtgctct 44380502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 42443239 - 42443289
Alignment:
Q  17 gaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||| |  ||||||||||| ||||||||||||||||||||||    
T  42443239 gaaggttgtcaaaaaatttgtaccaaatagttgttcaaatatcattgctct 42443289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 20284828 - 20284886
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 62  Q
    ||||||||||| ||||||||||| | | ||||| | |||||||||||||||||||||||    
T  20284828 aagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcatt 20284886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 21071457 - 21071515
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 62  Q
    ||||||||||| ||||||||||| | | ||||| | |||||||||||||||||||||||    
T  21071457 aagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcatt 21071515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 9314566 - 9314594
Alignment:
Q  38 accaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||||||||||||||||    
T  9314566 accaaatggttgttcaaatatcattgctc 9314594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 40951307 - 40951373
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  40951307 tgaaaagagagaaaaggaaggttgtcaaataggttgtacctaatggttgttcatatatcattgctct 40951373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19668141 - 19668078
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgc 64  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  19668141 tgaaaagagagaaaaggaaggttatcaaataggttgtatcaaatggttgttcaaatatcattgc 19668078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5167696 - 5167633
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgc 64  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  5167696 tgaaaagagagaaaatgaaggttgtcaagtaggttataccaaatggttgttcaaatatcattgc 5167633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13553260 - 13553316
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaata 57  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  13553260 tgaaaagagagaaaagaaagattgtcaaataggttgtaccaaatggttgttcaaata 13553316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30856924 - 30856986
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 63  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||||| |||||||||    
T  30856924 tgaaaagagagaaaaagaaggttgtcaaataaattgtaccaaatggttgttcatatatcattg 30856986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4842473 - 4842408
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  4842473 tgaaaaaagagaaaatgaaggttgtcaaataggttgtatcaaatggtagttcatatatcattgctc 4842408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 15283201 - 15283137
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||| ||||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  15283201 aaaaaagagaaaaggaaggttgtcaaataaattgtacgaaatggttattcaaatatcattgctct 15283137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 21805736 - 21805674
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||| | ||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  21805736 aagagagaataagaaggttgtcaaaaagattgtaccaaatggttgttaaaatatcattgctct 21805674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10288269 - 10288327
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatc 59  Q
    |||||||||||||||||||| ||||||||||| |||||||||||  || ||||||||||    
T  10288269 tgaaaagagagaaaaggaagattgtcaaatagattgtaccaaataattattcaaatatc 10288327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 13553310 - 13553347
Alignment:
Q  25 tcaaataggttgtaccaaatggttgttcaaatatcatt 62  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13553310 tcaaataggttgtaccaaatggttgttcaaatatcatt 13553347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 19637365 - 19637410
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  19637365 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctct 19637410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 19835958 - 19836003
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  19835958 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctct 19836003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35792410 - 35792354
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaata 57  Q
    |||||||||||| || ||||||||| ||||||||||||  |||||||||||||||||    
T  35792410 tgaaaagagagagaaagaaggttgttaaataggttgtattaaatggttgttcaaata 35792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36763474 - 36763407
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| ||||||||||| | |  |||| | ||||||||||||||||||||||||||||    
T  36763474 tgaaaagagagaaaaagaaggttgtcataaaaattgttaacaaatggttgttcaaatatcattgctct 36763407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 305902 - 305857
Alignment:
Q  21 gttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||| | || |||||||||||| ||||||||||||||||||||    
T  305902 gttgtcataaagattgtaccaaatgattgttcaaatatcattgctc 305857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 43791743 - 43791678
Alignment:
Q  3 aaaagagagaaaaggaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| ||||||||| | | ||||| || ||| |||||||||||||||||| ||||    
T  43791743 aaaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcattactct 43791678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 44719099 - 44719156
Alignment:
Q  77 gtttctaaaatgtttgtgtaggcacaagctcacacattcaccaacatacatccgtccc 134  Q
    |||||| |||| ||| |||||||| |||| |||||||||| |||| ||||||||||||    
T  44719099 gtttctgaaatttttatgtaggcagaagcccacacattcaacaacgtacatccgtccc 44719156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 32128279 - 32128311
Alignment:
Q  34 ttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||||||||| |||||||||||||||||||||    
T  32128279 ttgtaccaaatagttgttcaaatatcattgctc 32128311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8173266 - 8173201
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8173266 tgaaaagagagaaaagaaaggttgtcaaataggttataccaaatggttgttcaaatatcattgctc 8173201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32730006 - 32730072
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  32730006 tgaaaagagagaaaaagaatgttgtcaaataggttgtaccaaatggttgttcatatatcattgctct 32730072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16533214 - 16533147
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaa-tggttgttcaaatatcattgctct 67  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||    
T  16533214 tgaaaagagagaaaaggaaagttgtcaaataggttataccaaattgattgttcaaatatcattgctct 16533147  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21443805 - 21443871
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||| |||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  21443805 tgaaaagagataaaatgaaggttgtccaatagattgtaccaaatagttgttcaaatatcattgctct 21443871  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 25567426 - 25567382
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  25567426 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 25567382  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 25561875 - 25561831
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||| | |||| ||||||||| |||||||||||||||||||||    
T  25561875 ttgtcataaaggtggtaccaaatagttgttcaaatatcattgctc 25561831  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 26101389 - 26101345
Alignment:
Q  22 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    |||||| | |||| ||||||||| |||||||||||||||||||||    
T  26101389 ttgtcataaaggtggtaccaaatagttgttcaaatatcattgctc 26101345  T

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Target: scaffold0002 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 440835 - 440901
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 67  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  440835 tgaaaagagagaaaagaaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 440901  T

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Target: scaffold0184 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16548 - 16483
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||| ||||||||| |||| |||||||| | ||||||||||||||||||| ||||||||||||||    
T  16548 tgaaacgagagaaaaagaagattgtcaaaaaagttgtaccaaatggttgttgaaatatcattgctc 16483  T

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Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 56296 - 56361
Alignment:
Q  1 tgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 66  Q
    ||||| ||||||||| |||| |||||||| | ||||||||||||||||||| ||||||||||||||    
T  56296 tgaaacgagagaaaaagaagattgtcaaaaaagttgtaccaaatggttgttgaaatatcattgctc 56361  T

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Target: scaffold0318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 18241 - 18179
Alignment:
Q  5 aagagagaaaaggaaggttgtcaaataggttgtac-caaatggttgttcaaatatcattgctc 66  Q
    |||||||| |||| ||||||||| | | ||||||  |||||||||||||||||||||||||||    
T  18241 aagagagagaagggaggttgtcataaaagttgtaagcaaatggttgttcaaatatcattgctc 18179  T

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