View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2148_low_2 (Length: 544)
Name: NF2148_low_2
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 528
Target Start/End: Complemental strand, 41955774 - 41955256
Alignment:
| Q |
9 |
atcatcaatattatcgtgagtaatggataggcttttatttatttggttttcttttgggttaaaaatgatgggagttaatatacccatgcatggtgaacct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41955774 |
atcatcaatattatcgtgagtaatggataagcttttatttatttggttttcttttgggttaaaaatgatgggagttaatatacccatgcatggtgaacct |
41955675 |
T |
|
| Q |
109 |
ggctaataagacatacacaaataggggaaaggatgaatgagatgtgaaatagagtggggactattggatgggcgagaatatttttgtttctggttgagag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41955674 |
ggctaataagacatacacaaataggggaaaggatgaatg-----tgaaatagagtggggactattggatgggcaagaatatttttgtttctggttgagag |
41955580 |
T |
|
| Q |
209 |
catgcatcttcaagtaaagttcttaagtgtaaagtatattatttagcatttatataaatacttcgataatatacagaaattaatttgataactcgtgtat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41955579 |
catgcatcttcaagtaaagttcttaagtgtaaagtatattatgtagcatttatataaatacttcgataatatacagaaattaatttgataattcgtgtat |
41955480 |
T |
|
| Q |
309 |
ttctatttctacactataatgatgatttaagggtatgtatatttttccttaaaaaaagtaaatcatgcttgagggtcttgt-----nnnnnnnnnnntca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
41955479 |
ttctatttctacactataatgatgatttaagggtatgtatatttttccttaaaaaaagtaaatcatgcttgaggatcttgtaaaaaataaaaaaaattca |
41955380 |
T |
|
| Q |
404 |
tgtttgggagtaatttcttgtatattaatattttttcatgtttaacattgaattaaatttttatattgggtttaacttattcttataaaatcggtctgtg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
41955379 |
tgtttgggagtaatttcttgtatattaata-tttttcgtgtttaacattgaattaaatttttatattggatttaacttattcttataaaatcggtctggg |
41955281 |
T |
|
| Q |
504 |
atgtgaaaatttatctacttgtaag |
528 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
41955280 |
atgtgaaaatttatctactagtaag |
41955256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University