View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2148_low_3 (Length: 509)
Name: NF2148_low_3
Description: NF2148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2148_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 161 - 491
Target Start/End: Original strand, 35135577 - 35135907
Alignment:
| Q |
161 |
gtaggggacaatatattgactctacttcaaattattaagaatttatttcaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaattt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135577 |
gtaggggacaatatattgactctacttcaaattattaagaatttatttcaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaattt |
35135676 |
T |
|
| Q |
261 |
cttgttgattgattttgtgattctactagtattaatattcgatgaaactgatgttttacttgatttcaaatggggttttgtttttggttgatgtgtgtac |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135677 |
cttgttgattgattttgtgattctactagtattaatattcgatgaaactgatgttttacttgatttcaaatggggttttgtttttggttgatgtgtgtac |
35135776 |
T |
|
| Q |
361 |
catggtttggatgttttggacaagcccggttgtttgtgcaggtgtattgagtactataagtatagatccagattcggtgcggttgacacccaaaatttca |
460 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135777 |
catggtttggatgttttggacaagcctggttgtttgtgcaggtgtattgagtactataagtatagatccagattcggtgcggttgacacccaaaatttca |
35135876 |
T |
|
| Q |
461 |
gtcagtaagatcagaattgtctaatcaaaat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35135877 |
gtcagtaagatcagaattgtctaatcaaaat |
35135907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 161 - 460
Target Start/End: Original strand, 35143849 - 35144150
Alignment:
| Q |
161 |
gtaggggacaatatatt-gactctacttcaaattattaagaatttatttcaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaatt |
259 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35143849 |
gtaggggacaatatatttgactctactttaaattattaagaatttatttgaatttatattcctgcttgtgactcatctctaggatttgaaatttgaaatt |
35143948 |
T |
|
| Q |
260 |
tcttgttgattgattttgtgattctactagtattaatattcgatgaaactgatgttttacttgatttcaaatggggttttgtttttggttgatgtgtgta |
359 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
35143949 |
tcttgttgatcgattttgtgattctactagtattaatatttgatgaaactgatgctttacttgatttcaaatgaggttttgtttttggttgatgtgagta |
35144048 |
T |
|
| Q |
360 |
ccatggtttggatgttttggacaagcccggttgtttgtgcaggtgtattgagtact-ataagtatagatccagattcggtgcggttgacacccaaaattt |
458 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| || |||||| | ||||| | |||||| |||| ||||||||| ||| |||| | ||||||| |
|
|
| T |
35144049 |
ccatggtttggaagttttggacaagccttgttgtttggtcaagtgtatcgtgtactaacaagtatggatctggattcggtgaggtcgacatctaaaattt |
35144148 |
T |
|
| Q |
459 |
ca |
460 |
Q |
| |
|
|| |
|
|
| T |
35144149 |
ca |
35144150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 35135426 - 35135532
Alignment:
| Q |
10 |
attattcttatacctgatttttgtttttctcctgtgcaggtgatggacaaattctcactcatataaagttgttttatagtgcaaatgttataaggtcatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135426 |
attattcttatacctgatttttgtttttctcctgtgcaggtaatggacaaattctcactcatataaagttgttttatagtgcaaatgttataaggtcatc |
35135525 |
T |
|
| Q |
110 |
agttatg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
35135526 |
agttatg |
35135532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 35143693 - 35143797
Alignment:
| Q |
10 |
attattcttatacctgatttttgtttttctcctgtgcaggtgatggacaaattctcactcatataaa---gttgttttatagtgcaaatgttataaggtc |
106 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||| ||||||| |||||||||||| |||| ||||||| |||| |||| ||||||||||| |
|
|
| T |
35143693 |
attattcttataacttatttttgtttctctcctgtgcaggtaatggacacattctcactcatttaaaaattttgttttctagttcaaaggttataaggtc |
35143792 |
T |
|
| Q |
107 |
atcag |
111 |
Q |
| |
|
||||| |
|
|
| T |
35143793 |
atcag |
35143797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 35144382 - 35144441
Alignment:
| Q |
375 |
tttggacaagcccggttgtttgtgcaggtgtattgagtactataagtatagatccagatt |
434 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |||||| ||||| |||| |
|
|
| T |
35144382 |
tttggacaagcccggttgtttggccaggtgtattgggtactacaagtatggatccggatt |
35144441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University