View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21490_low_2 (Length: 343)
Name: NF21490_low_2
Description: NF21490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21490_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 33433830 - 33433583
Alignment:
| Q |
10 |
agttggacgatttgtttccacaccttgataggaatcttcaagaaagagagacagatggtaaggatcaaattcaagatagagttaataaagaccaccctac |
109 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||| |||||| || || || ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
33433830 |
agttggacgatctgtttccataccttgatagggatcttcaagaaatagagaccgaaggcgggg-tcaaattcaag-tagagttaataaa-accaccctac |
33433734 |
T |
|
| Q |
110 |
cccaagactaacatacttaatattccatgaatgaagccggttagaa--ttatggtggatcaagtgtctt-----ccaggttagttcctttaagagactga |
202 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| || |||||||||| | |||| |||||| |||||||| ||| |
|
|
| T |
33433733 |
cccaatactaacaaacctaatattccatgaatgaagccggttagaaatttatggttgaacaagtgtctttctagctaggtcagttcccttaagagattga |
33433634 |
T |
|
| Q |
203 |
ccttgttaaccagaaggatcaagg----tatctgaagggaagagacccaaa |
249 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33433633 |
ccttattaaccagaaggatcaaggtatatatctaaagggaagagacccaaa |
33433583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 33433364 - 33433310
Alignment:
| Q |
273 |
caagaaagtgttattcacattgacaccaatcccacaattcaatagttcaagaaac |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
33433364 |
caagaaagtgttattcacattgacaccaatcacataattcaatagttcaagaaac |
33433310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University