View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21490_low_3 (Length: 268)
Name: NF21490_low_3
Description: NF21490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21490_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 51526269 - 51526041
Alignment:
| Q |
20 |
gtgttcttttgtttaggcatccctttcttggctagtatttgacagttttggaacacagccgtggcgtctccaaagatgaaatccacagtaccactaattt |
119 |
Q |
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| T |
51526269 |
gtgttcttttgtttaggcatccctttcttggctagtatttgacagttttggaacacagccgtggcgtctccaaagatgaaatccacagtaccactaattt |
51526170 |
T |
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| Q |
120 |
tgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526169 |
tgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatct |
51526070 |
T |
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| Q |
220 |
taacgccactgcttggtgcttctcggcac |
248 |
Q |
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| T |
51526069 |
taacgccactgcttggtgcttctcggcac |
51526041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 51532000 - 51531791
Alignment:
| Q |
36 |
gcatccctttcttggctagtatttgacagttttggaacacagccgtggcgtctccaaagatgaaatccacagtaccactaattttgcattcacggtagaa |
135 |
Q |
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| T |
51532000 |
gcatccctttcttggctagaatttcgcaattctggaacataactgtgccatttccaaaaatgaaatccaccgtaccagtgattttacacgctttgtagaa |
51531901 |
T |
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| Q |
136 |
ctgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttgg |
235 |
Q |
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| T |
51531900 |
ttggcgctgtgtatgggtatataggctatcttgataaccgaatatcccacaccgataaaatacagagaggtcagagtccgatcttaaagccactgcttgt |
51531801 |
T |
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| Q |
236 |
tgcttctcgg |
245 |
Q |
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| T |
51531800 |
tccttctcgg |
51531791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 19509744 - 19509967
Alignment:
| Q |
20 |
gtgttcttttgtttaggcatccctttcttggctagtatttgacagttttggaacacagccgtggcgtctccaaagatgaaatccacagtaccactaattt |
119 |
Q |
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||||||||||| || || | |||||| || ||||||||||||||||||| || | || |||||| || |||||||| |||||||| || ||||| |||| |
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| T |
19509744 |
gtgttcttttgatttggtaaccctttttttactagtatttgacagttttgaaaaagagtcgtggcatcgccaaagataaaatccaccgtgccacttattt |
19509843 |
T |
|
| Q |
120 |
tgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatct |
219 |
Q |
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| T |
19509844 |
tgcattctcggaagaattggcgcattgtatgcgtgtagaggctgtcttggtaaccaaaaatcccacatcgatagaatacagagaggtcagagtcggatct |
19509943 |
T |
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| Q |
220 |
taacgccactgcttggtgcttctc |
243 |
Q |
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|| |||||||||||||||||||| |
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| T |
19509944 |
tagtgccactgcttggtgcttctc |
19509967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 1606529 - 1606599
Alignment:
| Q |
164 |
tcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttg |
234 |
Q |
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||||||||||| |||| |||||||||| || |||||||| || ||| ||||||||| |||||||||||| |
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| T |
1606529 |
tcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccactgcttg |
1606599 |
T |
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