View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21491_high_1 (Length: 502)
Name: NF21491_high_1
Description: NF21491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21491_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 47680421 - 47680898
Alignment:
| Q |
1 |
aaacttttaaaaaagtttatcatccatttaaattccataaatcttgaaggattattcttcgcaattgcgcaaaatattcggaagnnnnnnngaagacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47680421 |
aaacttttaaaaaagtttatcatccatttaaatcccataaatcttgaaggattatttttcgcaattgcgcaaaatattcggaagaaaaaaaaaagacaaa |
47680520 |
T |
|
| Q |
101 |
gtaagttcaattagggcaagatgatccctaagcaagcataatgagagaggcgcgtgattgatctatgtatgtgtggttgaggaggagcagagaatgaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47680521 |
ttaagttcaattagggcaagatgatccctaagcaagcataatgagagaggcgcgtgattgatctatgtatgtgtggttga--aggagcagagaatgaagg |
47680618 |
T |
|
| Q |
201 |
acctacatgcagtgacagcaaggcatggggggctaccctaaag---------gatggaaaagacaggattcgaatttttaaacacagaaaccaattgtgt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47680619 |
acctacatgcagtgacagcaaggcatggggggctaccctaaagaaaagcaaggatggaaaagacaggattcgaatttttaaacacagaaaccaattgtgt |
47680718 |
T |
|
| Q |
292 |
tgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatgatcatcaatactata |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47680719 |
tgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatgatcatcaatac--ta |
47680816 |
T |
|
| Q |
392 |
caacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtatatttggtagtatatggtat |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47680817 |
caacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtataattggtagtatatggtat |
47680898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University