View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21491_high_7 (Length: 315)

Name: NF21491_high_7
Description: NF21491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21491_high_7
NF21491_high_7
[»] chr5 (2 HSPs)
chr5 (4-314)||(33814564-33814874)
chr5 (185-314)||(33809826-33809956)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-314)||(661-974)
[»] chr4 (1 HSPs)
chr4 (1-314)||(9754277-9754590)
[»] chr3 (3 HSPs)
chr3 (1-314)||(54969173-54969486)
chr3 (27-309)||(4283994-4284273)
chr3 (1-55)||(13563709-13563763)
[»] chr7 (2 HSPs)
chr7 (117-314)||(4837507-4837704)
chr7 (4-88)||(4837703-4837787)
[»] chr6 (1 HSPs)
chr6 (180-314)||(1130085-1130219)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 314
Target Start/End: Original strand, 33814564 - 33814874
Alignment:
Q  4 aagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttgcaa 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  33814564 aagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttacaa 33814663  T
Q  104 tccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33814664 tccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgggtgttca 33814763  T
Q  204 aactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatatt 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814764 aactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatatt 33814863  T
Q  304 ctcaccggtgg 314  Q
    |||||||||||    
T  33814864 ctcaccggtgg 33814874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 33809826 - 33809956
Alignment:
Q  185 aaaaataaatgggtgttcaaact-caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaagg 282  Q
    |||||||||||||| |||||||| ||| | | ||| || |||||||| ||||| |||||||||| |||||| |||||||||||| || ||||||||||||    
T  33809826 aaaaataaatgggttttcaaacttcaattttaaaggga-caacccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaagg 33809924  T
Q  283 cattgattttgaagaaatattctcaccggtgg 314  Q
    ||||||||||||| |||| || || |||||||    
T  33809925 cattgattttgaaaaaatgttttccccggtgg 33809956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 661 - 974
Alignment:
Q  1 aagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttg 100  Q
    ||||||||| |||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  661 aagaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatggttg 760  T
Q  101 caatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  761 caatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgggtgt 860  T
Q  201 tcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaat 300  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  861 tcaaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaat 960  T
Q  301 attctcaccggtgg 314  Q
    ||||||||||||||    
T  961 attctcaccggtgg 974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 9754590 - 9754277
Alignment:
Q  1 aagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttg 100  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  9754590 aagaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatggttg 9754491  T
Q  101 caatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgt 200  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  9754490 taatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgggtgt 9754391  T
Q  201 tcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaat 300  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  9754390 tcaaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaat 9754291  T
Q  301 attctcaccggtgg 314  Q
    ||||||| ||||||    
T  9754290 attctcatcggtgg 9754277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 54969486 - 54969173
Alignment:
Q  1 aagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttg 100  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  54969486 aagaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatggttg 54969387  T
Q  101 caatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  54969386 caatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgggtgt 54969287  T
Q  201 tcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaat 300  Q
    | ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | ||||||||||||||||    
T  54969286 ttaaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaagaaat 54969187  T
Q  301 attctcaccggtgg 314  Q
    ||||||||||||||    
T  54969186 attctcaccggtgg 54969173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 27 - 309
Target Start/End: Complemental strand, 4284273 - 4283994
Alignment:
Q  27 taaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttgcaatccatggaagaagagatgaaatc 126  Q
    ||||||| ||| | ||| |||||||||||||| |||||||||| ||||||| |||||||||| |||||||| |||||| |||  ||||||| |||  |||    
T  4284273 taaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgcattcaagaagaaatgccatc 4284174  T
Q  127 cctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaac 226  Q
    ||||||||||||  | || |||||| ||||||||||||   ||||||| |||||||||||||||||| |||||||||| |||| ||||||| ||||||||    
T  4284173 cctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagctcatgtctgaatagaacaac 4284074  T
Q  227 ccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcacc 309  Q
     ||||||| |||||||||||||||   || |||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  4284073 tcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctcacc 4283994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13563763 - 13563709
Alignment:
Q  1 aagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaa 55  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||    
T  13563763 aagaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacctcaa 13563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 117 - 314
Target Start/End: Complemental strand, 4837704 - 4837507
Alignment:
Q  117 agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctga 216  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||    
T  4837704 agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga 4837605  T
Q  217 agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccggtgg 314  Q
    ||||||||||||||| ||||  |||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4837604 agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtgg 4837507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 4837787 - 4837703
Alignment:
Q  4 aagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataag 88  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  4837787 aagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag 4837703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 180 - 314
Target Start/End: Complemental strand, 1130219 - 1130085
Alignment:
Q  180 cattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaa 279  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    |||||| ||||||||||||||||||| |  |||||| |||||||||| ||    
T  1130219 cattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccatcaaaataa 1130120  T
Q  280 aggcattgattttgaagaaatattctcaccggtgg 314  Q
    ||||| |||||||||||||||||||||| ||||||    
T  1130119 aggcaatgattttgaagaaatattctcatcggtgg 1130085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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