View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21492_high_1 (Length: 338)
Name: NF21492_high_1
Description: NF21492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21492_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 41555524 - 41555853
Alignment:
| Q |
1 |
tacactctgtttatatttacatcaatactctcatcacttcctaatcctctacgtgattgcaatcgcttcctaattacatcaatattcaatatatatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555524 |
tacactctgtttatatttacatcaatactctcatcacttcctaatcctctacgtgattgcaatcgcttcctaattacatcaatattcaatatatatcaat |
41555623 |
T |
|
| Q |
101 |
tccactcaagaactcatcaaagatacattcatggcttcagctactacaatttcatcatcagaaccaacaaaggttcatacatcaagtatttcaagcatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41555624 |
tccactcaagaactcatcaaagatacatccatggcttcagctactacaatttcatcatcagaaccaacaaaggttcatacatcaaatatttcaagcatca |
41555723 |
T |
|
| Q |
201 |
aagcctttgcggaatcaaatggaacctctctcattccttccaattaccactccctcacagaacatggtgatattattgatgttgcagatgagattgcagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41555724 |
aagcctttgcggaatcaaatggaacctctctcattccttccaattaccactccctcacagaacatggtgatattattgatgttgcagatgagattgcagc |
41555823 |
T |
|
| Q |
301 |
ttccatcccaatcattgatttctctctgct |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41555824 |
ttccatcccaatcattgatttctctctgct |
41555853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 41560408 - 41560502
Alignment:
| Q |
233 |
attccttccaattaccactccctcacagaacatggtgatattattgatgttgcagatgagattgcagcttccatcccaatcattgatttctctct |
327 |
Q |
| |
|
|||||||| | ||||||||||||| |||||| || ||||||| |||||||| |||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
41560408 |
attccttcaagttaccactccctcgcagaacctgatgatattgttgatgttacagaggagcttgcagcttccatcccagtcattgatttctctct |
41560502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 41560313 - 41560404
Alignment:
| Q |
117 |
tcaaagatacattcatggcttcagctactacaatttcatcatcagaaccaacaaaggttcatacatcaagtatttcaagcatcaaagccttt |
208 |
Q |
| |
|
||||| |||||| ||||||||||||| || ||||||||||||||||| ||||| ||| || |||||| ||||||||| |||||||||||| |
|
|
| T |
41560313 |
tcaaatatacatccatggcttcagctcctttcatttcatcatcagaacctacaaaagttgatgcatcaaatatttcaagtatcaaagccttt |
41560404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University