View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_high_11 (Length: 448)
Name: NF21493_high_11
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 31081568 - 31081144
Alignment:
| Q |
11 |
aatattgtcatcaatccacctacccactccaacaccacatctctaccacctatcatagttttgagtgcaataaatttgaattttgaacacaccaatataa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31081568 |
aatattgtcatcaatccacctacccactccaacaccacatctctaccaccaatcataattttgagtgcaataaatttgaattttgaacccaccaatataa |
31081469 |
T |
|
| Q |
111 |
cactaaacgtccacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081468 |
cactaaacgtccacataatcatattttaattaattaagtctagtgaaaagagggtaattgtgaaaataatttatggcctaaaaaatcaatatgtagcaaa |
31081369 |
T |
|
| Q |
211 |
agnnnnnnnnn-cttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaata |
309 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081368 |
agaaaaagaaaacttaaaaagtagttcatacataataaacgtctaactatatctaaatgttatttggccaaagacaaagaaatagtattaaaaagaaata |
31081269 |
T |
|
| Q |
310 |
aagaaatgtatttcattcccaaatttgccacaagaaaatattggccttacctaacttttatgtattttgcttacttcattataactcgttcgtcacaact |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081268 |
aagaaatgtatttcattcccaaatttgccacaagaaaatattggccttatctaacttttatgtattttgcttacttcattataactcgttcgtcacaact |
31081169 |
T |
|
| Q |
410 |
gacgccattatggactgtgaatatt |
434 |
Q |
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||||||||||||||||||||||||| |
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| T |
31081168 |
gacgccattatggactgtgaatatt |
31081144 |
T |
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