View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_high_21 (Length: 331)
Name: NF21493_high_21
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 2705572 - 2705269
Alignment:
| Q |
12 |
atgaaaccaacaaaaataagtacaagatggtagctagtnnnnnnntggttggagtattcataagtgtatggttaaaagaacaagtgttggaaaaatattg |
111 |
Q |
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| T |
2705572 |
atgaaaccaacaaaaataagtacaagatggtagctagtaaaaaaatggttggagtattcataagtgtatggttaaaagaacaagtgttggaaaaatattg |
2705473 |
T |
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| Q |
112 |
tgtttcaaatgtgagagtttgttcagttgcatgtggtgttatgggatatttaggaaacaaaggttgtgttggagttagtatgttgattgaaggaacaagt |
211 |
Q |
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| T |
2705472 |
tgtttcaaatgtgagagtttgttcagttgcatgtggtgttatgggatatttaggaaacaaaggttgtgttggagttagtatgttgattgaaggaacaagt |
2705373 |
T |
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| Q |
212 |
ttttgttttgttgttgcacatttagcttcaggggaaaagaaaggtgatgaaggtagaaggaatcatcaagttgaagaaatttttagaagaacatcttttc |
311 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2705372 |
ttttgttttgttgttgcacatttagcttcgggggaaaagaaaggtgatgaaggtagaaggaatcatcaagttgaagaaatttttagaagaacatcttttc |
2705273 |
T |
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| Q |
312 |
ctag |
315 |
Q |
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|||| |
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| T |
2705272 |
ctag |
2705269 |
T |
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