View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_high_24 (Length: 271)
Name: NF21493_high_24
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_high_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 44005130 - 44005400
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
100 |
Q |
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| T |
44005130 |
atcctacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
44005229 |
T |
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| Q |
101 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
200 |
Q |
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| T |
44005230 |
ttctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
44005329 |
T |
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| Q |
201 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaat |
271 |
Q |
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| T |
44005330 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaat |
44005400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44009056 - 44009293
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
100 |
Q |
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| T |
44009056 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
44009155 |
T |
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| Q |
101 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
200 |
Q |
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| T |
44009156 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
44009255 |
T |
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| Q |
201 |
ttctttgatgccaaatcctttactctatccattactaa |
238 |
Q |
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| T |
44009256 |
ttctttgatgccaaatcctttactctatccattactaa |
44009293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 39846852 - 39846625
Alignment:
| Q |
6 |
acaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcattgtcta |
105 |
Q |
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| T |
39846852 |
acaaattttccaccaatgaacactgctggcactgaagggttacatccaagact---cctcaaagccctttccatttccctaccatagggttcattgtcaa |
39846756 |
T |
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| Q |
106 |
gttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagctttctt |
205 |
Q |
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| T |
39846755 |
gctcatgcacagcaggacttgctcctagctcatagaacaattgtgttatgctgtgacacatgtagcatgaactctttgtgaatataactgcagctttctt |
39846656 |
T |
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| Q |
206 |
tgatgccaaatcctttactctatccattact |
236 |
Q |
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| T |
39846655 |
tgatgccaaatccttcactctatccattact |
39846625 |
T |
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