View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_1 (Length: 570)
Name: NF21493_low_1
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Complemental strand, 41021715 - 41021181
Alignment:
| Q |
16 |
atgtgcagtgtgataggagcaagtgtaattggaatggggtattatacaatattatatggagaattcaaaggagatgaagatgagaaaagtagtgacgaaa |
115 |
Q |
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| T |
41021715 |
atgtgcagtgtgataggagcaagtgtaattggaatggggtattatacaatattatatggagaattcaaaggagatgaagatgagaaaagtagtgacgaaa |
41021616 |
T |
|
| Q |
116 |
actcagattctatggacaagaagattcctcttttgcaagaagatatgcaagtgtaaataaattagtagcttcaaagtggacttccagaaacttccactat |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41021615 |
actcagattctttggacaagaagattcctcttttgcaagaagatatgcaagtgtaaataaatcagtagcttcaaagtggacttccagaaacttccactat |
41021516 |
T |
|
| Q |
216 |
tctaatgtacaattgtcaaatacaatacaagctgcatatcatttcaaacnnnnnnnnnnngtgaaaaaatcatttcaattagattgtgatataggtctct |
315 |
Q |
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| T |
41021515 |
tctaatgtacaattgtcaaatacaatacaagctgcatatcatttcaaactttttttttttgtgaaaaaattatttcaattagattgtgatataggtctct |
41021416 |
T |
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| Q |
316 |
cctttgttgcaatannnnnnnnnnnnngttacaatagagggtttgttgcaaatatttttattaccatatatttactgctgcaactgtgtttaaatcatga |
415 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41021415 |
cctttgttgcaata--tttttttttttgttacaatagagggtttgttgcaaatatttttattaccatatatttactgctgcaactgtgtgtaaatcatga |
41021318 |
T |
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| Q |
416 |
aacattcaaagtcatacgttgagaaaaggtgtaatttgagatctctcaattttccttctatcataaaatttgtaactgtatatatgttattattgtttta |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41021317 |
aacattcaaagtcatacgttgagaaaaggtgtaatttgagatctctcaattttccttctatcataaaatttgtaactgtatatatgttattattgtttta |
41021218 |
T |
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| Q |
516 |
tactaatacaagtatctcattgccatattgatatttg |
552 |
Q |
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| T |
41021217 |
tactaatacaagtatctcattgccatattgatatttg |
41021181 |
T |
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