View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_13 (Length: 439)
Name: NF21493_low_13
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 27399958 - 27399520
Alignment:
| Q |
1 |
caagagtaacatggccttcatgtgcaaaaataaaggttaagtcacaatcaacttaaaagaacatcctttctttgatttgatcatctcaacaccacatttt |
100 |
Q |
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| T |
27399958 |
caagagtaacatggccttcatgtgcaaaaataaaggttaagtcacaatcaacttaaaagaacatcctttctttgatttgatcatctcaacaccacatttt |
27399859 |
T |
|
| Q |
101 |
ggtnnnnnnnnnttgtgggtcatgattgattgatatagattctaaattgatctttctccaattaatcttattcacagaacatgaagagtctattcaagga |
200 |
Q |
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| T |
27399858 |
ggtaaaaaaaaattgtgggccatgattgattgatacagattctaaattgatctttctccaattaatcttattcacagaacatgaagagtctattcaagga |
27399759 |
T |
|
| Q |
201 |
atgcgacgtacaaattatctggtttcatatacattgttatatattacaaatttttaatgtcctacaaacttaagaacctcacattacaattatccttttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27399758 |
atgcgacgtacaaattatctggtttcatatacattcttatatattacaaatttttaatgtcctacaaacttaagaacctcacattacaactatccttttg |
27399659 |
T |
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| Q |
301 |
t-----------------ttttatctctcttatttgagttactggatttattatccttacaggatcactttctgttctgagcttggaaattaaaacatgt |
383 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27399658 |
ttttttttttacctttgtttttatctctcttatttgagttactggatttattatccttacaggatcactttctgttctgagcttggaaattaaaacatgt |
27399559 |
T |
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| Q |
384 |
tacagtagggtaacattaaatagtggtgtgtatgcattg |
422 |
Q |
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| T |
27399558 |
tacagtagggtaacattaaatagtggtgtgtatgcattg |
27399520 |
T |
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