View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_14 (Length: 426)
Name: NF21493_low_14
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 411
Target Start/End: Original strand, 1920645 - 1921053
Alignment:
| Q |
3 |
gccactatatctttatcctccctcttcggagaagaacaaatctactgattgaagaccgacgactcgaagtcatccacacacctctaagagagtttgtgga |
102 |
Q |
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| T |
1920645 |
gccactacatcctcatcctccctcttcggagaagaacgaatctactgattgaagaccgacgactcgaagtcatccacac--ctctaagagagattgtgga |
1920742 |
T |
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| Q |
103 |
tctcagatcctaacatattgcaattaagcaacttaacaaacaacatgtatttggacttcnnnnnnnn---attggtgggttttgttaatttttaatattt |
199 |
Q |
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| T |
1920743 |
tctcagatcctaacatattgcaattaagcaacttaacaaacaacatgtatttggacttcttcttttttttattggtgggttttgttaatttttaatattt |
1920842 |
T |
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| Q |
200 |
gttgaaataaaactaaaatgaaattaggttgcttcttttcaaatacaataacatattgtcaatgatctacttgaatacatgttgtttattggaactagtc |
299 |
Q |
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| T |
1920843 |
gttgaaa-aaaactaaaaagaaattaggttgcttcttttcaaatacaataacatattgtcaatgatctacttgaatacatgttgtttattggaactagtc |
1920941 |
T |
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| Q |
300 |
atgagtacacacagcatcactagttgcattgcaattgctgttaaggattttggctatatacatggatccaacaaaccaaatgaataatcaggaaattatt |
399 |
Q |
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| T |
1920942 |
atgagtacacacagcatcactagttgcattgcaattgctgttaaggattttggctatatacatggatacaacaaaccaaatgaataatcaggaaattatt |
1921041 |
T |
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| Q |
400 |
aattattttttg |
411 |
Q |
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| T |
1921042 |
tactattttttg |
1921053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 1921059 - 1921096
Alignment:
| Q |
389 |
aggaaattattaattattttttgcaaatcatggaaatt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1921059 |
aggaaattattaattattttttgcaaatcatggaaatt |
1921096 |
T |
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