View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21493_low_17 (Length: 396)

Name: NF21493_low_17
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21493_low_17
NF21493_low_17
[»] chr4 (10 HSPs)
chr4 (1-183)||(2917616-2917798)
chr4 (327-388)||(24272499-24272564)
chr4 (110-179)||(4940061-4940130)
chr4 (110-179)||(15545053-15545122)
chr4 (94-179)||(47286607-47286692)
chr4 (118-184)||(53238464-53238530)
chr4 (114-170)||(26736571-26736627)
chr4 (129-175)||(42110021-42110067)
chr4 (94-167)||(18764660-18764733)
chr4 (128-169)||(35390408-35390449)
[»] chr5 (15 HSPs)
chr5 (1-182)||(25981347-25981528)
chr5 (4-191)||(3059183-3059370)
chr5 (1-182)||(34225886-34226067)
chr5 (1-98)||(14395839-14395936)
chr5 (74-178)||(26326941-26327045)
chr5 (93-179)||(33727426-33727512)
chr5 (93-179)||(33798705-33798791)
chr5 (94-167)||(11773293-11773366)
chr5 (132-182)||(14395786-14395836)
chr5 (94-179)||(13475557-13475642)
chr5 (110-179)||(971737-971806)
chr5 (122-167)||(39421297-39421342)
chr5 (127-179)||(423989-424041)
chr5 (120-152)||(2197647-2197679)
chr5 (127-179)||(9047491-9047543)
[»] chr3 (15 HSPs)
chr3 (1-182)||(50386047-50386228)
chr3 (1-182)||(497689-497870)
chr3 (110-179)||(7147179-7147248)
chr3 (110-179)||(22418844-22418913)
chr3 (19-179)||(27237346-27237506)
chr3 (110-179)||(43055292-43055361)
chr3 (110-179)||(49430482-49430551)
chr3 (70-182)||(3541693-3541804)
chr3 (115-179)||(40154756-40154820)
chr3 (127-186)||(36617921-36617980)
chr3 (114-175)||(51837497-51837558)
chr3 (127-179)||(25070855-25070907)
chr3 (127-179)||(26557630-26557682)
chr3 (127-179)||(26903067-26903119)
chr3 (127-179)||(28210883-28210935)
[»] chr7 (14 HSPs)
chr7 (1-180)||(46912926-46913105)
chr7 (70-179)||(36616868-36616977)
chr7 (73-181)||(46357783-46357891)
chr7 (112-179)||(42896852-42896919)
chr7 (92-172)||(18104496-18104576)
chr7 (112-175)||(4519742-4519805)
chr7 (110-179)||(46457683-46457752)
chr7 (94-178)||(33081854-33081938)
chr7 (114-177)||(5848787-5848850)
chr7 (110-175)||(28998311-28998376)
chr7 (94-169)||(31670593-31670668)
chr7 (112-178)||(43998120-43998186)
chr7 (110-177)||(23041601-23041670)
chr7 (127-179)||(38663350-38663402)
[»] chr1 (10 HSPs)
chr1 (1-182)||(50158800-50158981)
chr1 (1-182)||(38741194-38741376)
chr1 (1-180)||(33403636-33403824)
chr1 (58-182)||(2123579-2123703)
chr1 (70-179)||(11943668-11943777)
chr1 (94-179)||(32942269-32942354)
chr1 (110-179)||(37188202-37188271)
chr1 (144-184)||(18431237-18431277)
chr1 (144-179)||(5458623-5458658)
chr1 (127-179)||(22787427-22787479)
[»] chr8 (8 HSPs)
chr8 (5-182)||(29246832-29247009)
chr8 (94-169)||(35702120-35702195)
chr8 (105-176)||(14443048-14443119)
chr8 (110-179)||(11920631-11920700)
chr8 (100-179)||(7351396-7351475)
chr8 (93-175)||(5548508-5548592)
chr8 (126-179)||(16428095-16428148)
chr8 (127-179)||(45486339-45486391)
[»] chr2 (3 HSPs)
chr2 (32-182)||(917949-918099)
chr2 (112-182)||(41911797-41911867)
chr2 (109-167)||(9929322-9929380)
[»] chr6 (6 HSPs)
chr6 (72-184)||(595701-595813)
chr6 (110-179)||(6174377-6174446)
chr6 (91-179)||(843636-843724)
chr6 (94-177)||(13850731-13850814)
chr6 (127-179)||(16693593-16693645)
chr6 (127-184)||(18816824-18816881)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 2917798 - 2917616
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||      
T  2917798 tttaaattatttgtattaaaaaagggtgttgctgggaatcaaactagtaacaacaaggtaaaatgcagtcacccaaaccacttatctatagcatttaaga 2917699  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 183  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2917698 tatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 2917616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 24272564 - 24272499
Alignment:
Q  327 ttgtaaatttgttccacattatgaaatattaaatcggct----taccaggtgttatttgatgatgt 388  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  24272564 ttgtaaatttgttccacattatgaaatattaaatcggcttacgtaccaggtgttatttgatgatgt 24272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 4940061 - 4940130
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| | |||||||||||||    
T  4940061 tttactttgttaatatatatagttcctttgcaaattttgccacaccaatatcaactctctagatccgccc 4940130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 15545053 - 15545122
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  15545053 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 15545122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 47286692 - 47286607
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  47286692 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 47286607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 53238464 - 53238530
Alignment:
Q  118 gttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 184  Q
    ||||||||||||| ||||||||| | ||| | |||||||||||| || |||||||||||| ||||||    
T  53238464 gttaatatatatagtttctttgatattttagtcacaccaatatcgaaagtctagatccgcacatgaa 53238530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 26736571 - 26736627
Alignment:
Q  114 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtcta 170  Q
    |||| |||||||||||| ||||||||| | ||| ||||||||||||||||| |||||    
T  26736571 ctttattaatatatatagtttctttgatattttagccacaccaatatcaaaagtcta 26736627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 42110067 - 42110021
Alignment:
Q  129 taatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 175  Q
    ||||| ||||||||||||||  ||||||||||||||||| |||||||    
T  42110067 taattactttgaaagttttgttacaccaatatcaaatgtatagatcc 42110021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 18764733 - 18764660
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 167  Q
    ||||| ||||||||  ||||||||||||||||||||| || |||| | ||||||| || | |||||| ||||||    
T  18764733 tttaaggtatcaatactttactttgttaatatatatagttactttaacagttttgtcagatcaatattaaatgt 18764660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 35390449 - 35390408
Alignment:
Q  128 ataatttctttgaaagttttgccacaccaatatcaaatgtct 169  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    
T  35390449 ataatttctttgaaattttagccacactaatatcaaatgtct 35390408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 25981347 - 25981528
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |    
T  25981347 tttaaattatttgtattaaaaaagggtgttgctgggaatcgaactagtaacaacaaggtaaaacgcagtcacccaaaccacttatctatagcatttaagg 25981446  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25981447 tatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcgaatgtctagatccgcccatg 25981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 3059183 - 3059370
Alignment:
Q  4 aaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtat 103  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||||| ||||    
T  3059183 aaattatttgtattaaaaaagggtgttgctgggaatcaaactagtaacaacaaggtaaaacgcagtcacccaaatcacttatctatagcatttaaggtat 3059282  T
Q  104 caatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaatggagag 191  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  3059283 caatgttttactttgttaatatatatagttactttgaaagttttgccacaccaatatcaaatgtctagatccacccatggatgtagag 3059370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 34225886 - 34226067
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||      
T  34225886 tttaaattatttgtattaaaaaagggtgttgctgggaatcgaactagtaacaacaaggtaaaatgcagtcacccaaaccacttatctataacatttaagt 34225985  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34225986 tatcaaagttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 34226067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14395936 - 14395839
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaa 98  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14395936 tttaaattacttgtattaaaaaagggtgttgctgggaattgaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctatagcatttaa 14395839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 26326941 - 26327045
Alignment:
Q  74 caaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagat 173  Q
    |||||||||| ||||||   ||||| || |||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  26326941 caaaccatttttctatattgtttaaagtgtcaatgttctactttgttaatatacatagtttctttgaaagttttgctacaccaatatcaaatgtctagat 26327040  T
Q  174 ccgcc 178  Q
    |||||    
T  26327041 ccgcc 26327045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 33727426 - 33727512
Alignment:
Q  93 atttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||||| || |||||| | ||||||||||||||||||| ||  |||||||||||| ||| |||||||||||||||||||||||||||    
T  33727426 atttaaagtgtcaatggtctactttgttaatatatatagttattttgaaagttttaccaaaccaatatcaaatgtctagatccgccc 33727512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 33798705 - 33798791
Alignment:
Q  93 atttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||||| || |||||| | ||||||||||||| ||||| ||  |||||||||||||||| |||||||||||||||||||||||||||    
T  33798705 atttaaagtgtcaatggtctactttgttaatacatatagttgttttgaaagttttgccaaaccaatatcaaatgtctagatccgccc 33798791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 11773293 - 11773366
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 167  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  11773293 tttaaggtatcaatgctttactttattaatatatataattgctttgaaaattttgccacaccaaaatcaaatgt 11773366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 14395836 - 14395786
Alignment:
Q  132 tttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14395836 tttctttgaaagttttgccgcaccaatatcaaatgtctagatccgcccatg 14395786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 13475642 - 13475557
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  13475642 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 13475557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 971806 - 971737
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||| ||||| ||  |||||| |||||||||||| | |||||||||||| |||||||||    
T  971806 tttactttgttaataaatatagttgatttgaatgttttgccacactattatcaaatgtctggatccgccc 971737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 39421297 - 39421342
Alignment:
Q  122 atatatataatttctttgaaagttttgccacaccaatatcaaatgt 167  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  39421297 atatatatagttgctttgaaagttttgccacaccaatatcaaatgt 39421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 424041 - 423989
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||||||||||    
T  424041 tatagtttctttaaaaaatttgccacactaatatgaaatgtctagatccgccc 423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 2197647 - 2197679
Alignment:
Q  120 taatatatataatttctttgaaagttttgccac 152  Q
    ||||||||||| |||||||||||||||||||||    
T  2197647 taatatatatagtttctttgaaagttttgccac 2197679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9047543 - 9047491
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| |||  |||||||||| ||||| ||||||||||||||||||    
T  9047543 tatagtttctttaaaaaatttgccacactaatatgaaatgtctagatccgccc 9047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 50386047 - 50386228
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||| |    
T  50386047 tttaaattatttgtattaaaaaagggtgttgctgggaatcgaactagtaacaacaaggtaaaacgcaatcacccaaaccacttatctatagcatttaagg 50386146  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50386147 tatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50386228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 497870 - 497689
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||  ||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| |    
T  497870 tttaaattatttgtatctaaaaagggtgttgctgggaatcgaactagtaacaacaaggttaaacgcagtcacccaaaccacttatctatagcatttaagg 497771  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    ||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  497770 tattaatgttttactttgttaatatatatagttgatttgaaagttttgccacaccaatatcatatgtctagatccgcccatg 497689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 7147248 - 7147179
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| |||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||    
T  7147248 tttattttgttaatatatatagtttctttgcaaattttgccacaccaatatcaactgtctagatccgccc 7147179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 22418844 - 22418913
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  22418844 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaattgtctggatccgccc 22418913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 27237506 - 27237346
Alignment:
Q  19 aaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtatcaatgttttactttg 118  Q
    |||||||||||||| |  |||| |||  | ||||| | ||||||| ||  ||||| | |||||||  |||||  ||||||  |||||||  |||||||||    
T  27237506 aaaaagggtgttgcagagaatcgaacctgcaacaaaatggtaaaatgcttccacctataccatttcactatattatttaagatatcaattatttactttg 27237407  T
Q  119 ttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  27237406 ttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 27237346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 43055361 - 43055292
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||| |||||||||||| |||||||| || |||||||||||||||||||| | |||||||||||||    
T  43055361 tttaatttattaatatatatagtttctttgcaaattttgccacaccaatatcaactctctagatccgccc 43055292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 49430551 - 49430482
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| |||||||  || ||||| |||||||||||||| | |||||||||||||    
T  49430551 tttactttgttaatatatatagtttctttacaaattttgtcacaccaatatcaactctctagatccgccc 49430482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 3541804 - 3541693
Alignment:
Q  70 cacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 169  Q
    |||||||||||||| |||| |  ||||||  | |||||| || ||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||    
T  3541804 cacccaaaccattt-tctagactatttaagttgtcaatgcttcactttattaatatatatagttactttgaaaattttgtcacaccaatatcaaatgtct 3541706  T
Q  170 agatccgcccatg 182  Q
      ||||| |||||    
T  3541705 gcatccgtccatg 3541693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 40154820 - 40154756
Alignment:
Q  115 tttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||||||||||||||| ||||||||| | ||| ||||||| ||||||||| |||||| |||||||    
T  40154820 tttgttaatatatatagtttctttgatattttagccacactaatatcaaaagtctaggtccgccc 40154756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 36617921 - 36617980
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaatg 186  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| ||||||    
T  36617921 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgcccctgaatg 36617980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 51837558 - 51837497
Alignment:
Q  114 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 175  Q
    |||||||||||||||| |||||||||| | |||  ||| | |||||||||| ||||||||||    
T  51837558 ctttgttaatatatattatttctttgatattttatccaaatcaatatcaaaagtctagatcc 51837497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 25070855 - 25070907
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  25070855 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 25070907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 26557630 - 26557682
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||||    
T  26557630 tatagtttctttaaaaattttgccacactaatatgacatgtctagatccgccc 26557682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 26903119 - 26903067
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  26903119 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 26903067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 28210935 - 28210883
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  28210935 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 28210883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 46913105 - 46912926
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||||||||||||||||||||| |||  |||||||||||| |||||||||| ||| ||||||||||| ||||||||| ||||||| |    
T  46913105 tttaaattatttgtattaaaaaagggtgttgctgggaattgaactagtaacaataaggtaaaacacagtcacccaaaccacttatctatagcatttaagg 46913006  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 180  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  46913005 tatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 46912926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 36616977 - 36616868
Alignment:
Q  70 cacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 169  Q
    |||||||||||||||||| || ||||||| |||  |||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||    
T  36616977 cacccaaaccatttatctgtagcatttaaggtaagaatgttttactttgttaatatatatagtttgtttgaaaattttaccacaccaatatcaaatgtct 36616878  T
Q  170 agatccgccc 179  Q
    ||||||||||    
T  36616877 agatccgccc 36616868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 46357891 - 46357783
Alignment:
Q  73 ccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctaga 172  Q
    |||||||||||  |||||   ||||| || |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46357891 ccaaaccattttgctatactgtttaaagtgtcaatggtctactttgttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtctaga 46357792  T
Q  173 tccgcccat 181  Q
    |||||||||    
T  46357791 tccgcccat 46357783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 42896919 - 42896852
Alignment:
Q  112 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42896919 tactttgttaatatatatagtttttttaaaagttttgccacaccaatatcaaatgtctagatccgccc 42896852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 18104496 - 18104576
Alignment:
Q  92 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctaga 172  Q
    |||||||||||||||||| ||||||| |||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||||    
T  18104496 catttaatgtatcaatgtgttactttattaatatatatagtttgtttcaaaattttgtcacaccaatatcaaatgtctaga 18104576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 4519742 - 4519805
Alignment:
Q  112 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 175  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  4519742 tactttgttaatatatatagttgctttgcaagttttgtcacaccaatatcaaatgtctagatcc 4519805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 46457752 - 46457683
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  46457752 tttactttgttaatatatatagttactttgcaaattttgccacaccaatatcaactgtctggatccgccc 46457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 33081854 - 33081938
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 178  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| ||||||||    
T  33081854 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcc 33081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 5848787 - 5848850
Alignment:
Q  114 ctttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 177  Q
    ||||||||||||||||||||| ||||| | ||| | ||||||||||||||| ||||||||||||    
T  5848787 ctttgttaatatatataatttatttgatattttagtcacaccaatatcaaaagtctagatccgc 5848850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 28998311 - 28998376
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 175  Q
    ||||||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||    
T  28998311 tttactttgttaatatatatagttgctttgcaaattttgccataccaatatcaattgtctggatcc 28998376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 31670593 - 31670668
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 169  Q
    ||||| || ||||| |||||||||||||||||||||| ||  |||| || ||||  ||||||||||||||||||||    
T  31670593 tttaaggtgtcaatattttactttgttaatatatatagttgttttggaaattttatcacaccaatatcaaatgtct 31670668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 43998186 - 43998120
Alignment:
Q  112 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcc 178  Q
    ||||||||||||||||||| || ||||| || ||||| |||||||||||||| | ||| ||||||||    
T  43998186 tactttgttaatatatatagttactttgcaaattttgtcacaccaatatcaactctctggatccgcc 43998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 23041670 - 23041601
Alignment:
Q  110 tttactttgttaatatatataa--tttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 177  Q
    |||||||||||||||||||||   || ||||  || |||||||||||||||||||| ||||| |||||||    
T  23041670 tttactttgttaatatatatatagttgcttttcaaattttgccacaccaatatcaactgtctggatccgc 23041601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 38663350 - 38663402
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  38663350 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 38663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 50158800 - 50158981
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatg 100  Q
    ||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||  ||||||||||| ||||||||| ||||||| |    
T  50158800 tttaaattatttgtattaaaaaagggtgttgctgggaattgaactagtaacaacaaggtaaaacacaatcacccaaaccacttatctatagcatttaagg 50158899  T
Q  101 tatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50158900 tatcaatgttttactttgttaatatatatggttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50158981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 38741194 - 38741376
Alignment:
Q  1 tttaaattacttgtattaaaa-aagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaat 99  Q
    ||||||||| ||||||||||| |||||||||||||| |||  |||||||||||| |||||||||| ||  ||||||||||| ||||||||| |||||||     
T  38741194 tttaaattatttgtattaaaaaaagggtgttgctgggaattgaactagtaacaataaggtaaaacacaatcacccaaaccacttatctatagcatttaag 38741293  T
Q  100 gtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38741294 gtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 38741376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 33403636 - 33403824
Alignment:
Q  1 tttaaattacttgtattaaaaaagggtgttgctggcaatcaaact---------agtaacaacaaggtaaaacgcagccacccaaaccatttatctataa 91  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||         ||||||||||||||||||| ||| ||||||||||| |||||||||     
T  33403636 tttaaattatttgtattaaaaaagggtgttgctgggaatcgaactagtcgaactagtaacaacaaggtaaaacacagtcacccaaaccacttatctatag 33403735  T
Q  92 catttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 180  Q
    ||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  33403736 catttaaggtaacaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccca 33403824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 2123703 - 2123579
Alignment:
Q  58 gtaaaacgcagccacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaa 157  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  2123703 gtaaaacgcagtcactcaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgtcacaccaa 2123604  T
Q  158 tatcaaatgtctagatccgcccatg 182  Q
    |||||||||||||||||||||||||    
T  2123603 tatcaaatgtctagatccgcccatg 2123579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 11943777 - 11943668
Alignment:
Q  70 cacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 169  Q
    |||||||||||||||| | || ||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||    
T  11943777 cacccaaaccatttatatgtagcatttaaggtgtcaatgttttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtct 11943678  T
Q  170 agatccgccc 179  Q
    ||||||||||    
T  11943677 agatccgccc 11943668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 32942269 - 32942354
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  32942269 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 32942354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 37188202 - 37188271
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  37188202 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaattgtctggatccgccc 37188271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 18431277 - 18431237
Alignment:
Q  144 ttttgccacaccaatatcaaatgtctagatccgcccatgaa 184  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  18431277 ttttgccacactaatatgaaatgtctagatccgcccatgaa 18431237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 5458658 - 5458623
Alignment:
Q  144 ttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5458658 ttttgccacaccaatatcaaatgtctacatccgccc 5458623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 22787479 - 22787427
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| ||||| | ||||||||||||||||    
T  22787479 tatagtttctttaaaaattttgccacactaatatgacatgtctagatccgccc 22787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 29247009 - 29246832
Alignment:
Q  5 aattacttgtattaaaaaagggtgttgctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtatc 104  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  ||||||||||| ||||||||| ||||||| |||||    
T  29247009 aattatttgtattaaaaaagggtgttgttgggaatcaaactagtaacaacaaggtaaaacacaatcacccaaaccacttatctatagcatttaaggtatc 29246910  T
Q  105 aatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29246909 aatgttatactttgttaatatatatagttgctttgaaagttttgccacatcaatatcaaatgtctagatccgcccatg 29246832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 35702120 - 35702195
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtct 169  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35702120 tttaaggtgtcaatgttttactttgttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtct 35702195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 14443048 - 14443119
Alignment:
Q  105 aatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccg 176  Q
    |||| ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||||    
T  14443048 aatgctttactttgttaatatatatagttactttgcaaattttgccacaccaatatcaactgtctggatccg 14443119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 11920700 - 11920631
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||| ||||||||||||||| |||||||| || ||| |||||||||||||||| | |||||||||||||    
T  11920700 tttacgttgttaatatatatagtttctttgcaaatttcgccacaccaatatcaactctctagatccgccc 11920631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 7351475 - 7351396
Alignment:
Q  100 gtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||  ||||||||||||||| ||||| ||  ||| ||  |||||||||||||||||||||||||| |||||||||    
T  7351475 gtatcaattatttactttgttaataaatatagttgatttaaatattttgccacaccaatatcaaatgtctggatccgccc 7351396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 5548508 - 5548592
Alignment:
Q  93 atttaatgtatcaatgttttactttgttaatatatat--aatttctttgaaagttttgccacaccaatatcaaatgtctagatcc 175  Q
    |||||| ||||||| | | |||||| |||||||||||  | ||||||||||||||||||||||| || ||||||||| |||||||    
T  5548508 atttaaagtatcaacgatctactttattaatatatatttagtttctttgaaagttttgccacactaacatcaaatgtttagatcc 5548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 16428148 - 16428095
Alignment:
Q  126 atataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  16428148 atatagtttatttgaaagttttgccacatcaatatcaaatgtctggatccgccc 16428095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 45486339 - 45486391
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  45486339 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgccc 45486391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 917949 - 918099
Alignment:
Q  32 ctggcaatcaaactagtaacaacaaggtaaaacgcagccacccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataa 131  Q
    |||| |||| ||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||     
T  917949 ctgggaatcgaactagtaacaacaaggtaaaacgcaatcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatag 918048  T
Q  132 tttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  918049 ttgctttgaaagttttgccacaccaatatcaaatgtttagatccgcccatg 918099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 41911797 - 41911867
Alignment:
Q  112 tactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 182  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41911797 tactttgttaatatatattgttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 41911867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 9929322 - 9929380
Alignment:
Q  109 ttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgt 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9929322 ttttactttgttaatatatatattttctttgaaagttttgccacaccaaaatcaaatgt 9929380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 595701 - 595813
Alignment:
Q  72 cccaaaccatttatctataacatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctag 171  Q
    |||||||||||||||| || |||||||  |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||    
T  595701 cccaaaccatttatctgtagcatttaagatatcaatgttttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtctag 595800  T
Q  172 atccgcccatgaa 184  Q
    |||| ||| ||||    
T  595801 atccacccctgaa 595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 6174446 - 6174377
Alignment:
Q  110 tttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||    
T  6174446 tttactttgttaatatatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 6174377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 843636 - 843724
Alignment:
Q  91 acatttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||||||| || |||||| | |||||| |||||||||||| ||  ||| ||||||||| |||||||||||||||||| |||||||||||    
T  843636 acatttaaagtgtcaatggtctactttattaatatatatagttgttttaaaagttttgtcacaccaatatcaaatgtttagatccgccc 843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 13850731 - 13850814
Alignment:
Q  94 tttaatgtatcaatgttttactttgttaatatatataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 177  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||||||||| |||||||    
T  13850731 tttaaggtatcaattatttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgc 13850814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 16693593 - 16693645
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 179  Q
    |||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||||    
T  16693593 tatagtttctttaaaaattttgccacactaatatgaaatgtctagatccgccc 16693645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 18816881 - 18816824
Alignment:
Q  127 tataatttctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatgaa 184  Q
    |||| ||||||| ||| ||||||||||| |||||  ||||||||||||||||| ||||    
T  18816881 tatagtttctttaaaaattttgccacactaatatgcaatgtctagatccgcccctgaa 18816824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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