View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21493_low_18 (Length: 378)

Name: NF21493_low_18
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21493_low_18
NF21493_low_18
[»] chr3 (6 HSPs)
chr3 (10-361)||(24638014-24638365)
chr3 (10-361)||(24646947-24647294)
chr3 (20-147)||(20620670-20620798)
chr3 (101-168)||(20619706-20619773)
chr3 (257-345)||(24716629-24716712)
chr3 (20-109)||(48099378-48099468)
[»] scaffold0197 (2 HSPs)
scaffold0197 (101-168)||(7237-7304)
scaffold0197 (186-242)||(7339-7395)
[»] chr8 (3 HSPs)
chr8 (107-168)||(15935270-15935331)
chr8 (42-109)||(40270352-40270420)
chr8 (42-108)||(19183626-19183693)
[»] scaffold0009 (1 HSPs)
scaffold0009 (42-109)||(32119-32187)
[»] chr1 (5 HSPs)
chr1 (20-109)||(9932096-9932186)
chr1 (20-109)||(44387578-44387668)
chr1 (42-109)||(24210233-24210301)
chr1 (42-98)||(45030010-45030066)
chr1 (42-98)||(45034861-45034917)
[»] scaffold0936 (1 HSPs)
scaffold0936 (20-109)||(3569-3658)
[»] scaffold0655 (1 HSPs)
scaffold0655 (42-98)||(5642-5698)
[»] scaffold0134 (1 HSPs)
scaffold0134 (42-109)||(41037-41105)
[»] chr6 (3 HSPs)
chr6 (42-109)||(16594886-16594954)
chr6 (42-98)||(33166251-33166307)
chr6 (95-141)||(21875304-21875350)
[»] chr5 (1 HSPs)
chr5 (62-109)||(1545864-1545912)
[»] chr2 (1 HSPs)
chr2 (64-109)||(40623336-40623381)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 24638365 - 24638014
Alignment:
Q  10 gacatcatcacaaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638365 gacatcatcacaaaggcctactttgagttcattttgatgattttcagaccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 24638266  T
Q  110 gtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638265 gtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 24638166  T
Q  210 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacact 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638165 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacact 24638066  T
Q  310 gtttgcatcagctagagcctccaccccatgcttgtgatccctgctgcacttg 361  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24638065 gtttgcatcagctagagcctccaccccatgcttgtgctccctgctgcacttg 24638014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 24647294 - 24646947
Alignment:
Q  10 gacatcatcacaaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 109  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647294 gacatcttcacaaaggcctactttgagttctttttgatgattttcagaccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 24647195  T
Q  110 gtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 209  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647194 gtttgactttatgtaattatgttagtagctatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 24647095  T
Q  210 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacact 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  24647094 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacag----attcaagtatgctcagttacact 24646999  T
Q  310 gtttgcatcagctagagcctccaccccatgcttgtgatccctgctgcacttg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646998 gtttgcatcagctagagcctccaccccatgcttgtgatccctgctgcacttg 24646947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 20620670 - 20620798
Alignment:
Q  20 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgg-ggtgtgatagaatgtttgactt 118  Q
    |||||||| || | |||||| ||||||| ||||||  |||| | ||||||| ||| ||||||||||||| ||| ||| ||| ||||||||||||||||||    
T  20620670 caaaggccaacctcgagttctttttgataattttcgaaccagtttaagcgttcgtgaacctcccgcttcgacttcggaggtatgatagaatgtttgactt 20620769  T
Q  119 tatgtaattatgttagtagttatgttggt 147  Q
    |||||||||||||||||| ||||||||||    
T  20620770 tatgtaattatgttagtaattatgttggt 20620798  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 20619706 - 20619773
Alignment:
Q  101 tgatagaatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc 168  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||||||    
T  20619706 tgatagaatgtttgactttatgtaattatgttagtatttacgttggttattattttttaattactctc 20619773  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 24716712 - 24716629
Alignment:
Q  257 ttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacactgtttgcatcagctagagcctccaccccatgcttgtg 345  Q
    |||||||||||||||||||| ||||||||    |||  ||||||||| ||| ||||||||||||||||| |||||||| ||||||||||    
T  24716712 ttgtaattcaagtctgcaaggaacagatt----caataatgctcagtgacattgtttgcatcagctaga-cctccacctcatgcttgtg 24716629  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 48099468 - 48099378
Alignment:
Q  20 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 109  Q
    |||||||||||   | |||| ||||||||||||||  |||| |||||| || ||| ||||||||||||| ||||| |||||||||||||||    
T  48099468 caaaggcctaccgcgtgttctttttgatgattttcgaaccagtctaagtgttcgtgaacctcccgcttcgactgcgggggtgtgatagaat 48099378  T

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Target: scaffold0197 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 7237 - 7304
Alignment:
Q  101 tgatagaatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc 168  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  7237 tgatagaatgtttgaccttatgtaattatgttagtaattatgttggttattactttgtaattactctc 7304  T

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Target: scaffold0197; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 7339 - 7395
Alignment:
Q  186 taactgtatatatactcttgatcattacaaataaaattcacggattgatttccttta 242  Q
    ||||| |||||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  7339 taactatatatatactcttgatcattatcaatgaaattcacgaattgatttccttta 7395  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 15935331 - 15935270
Alignment:
Q  107 aatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc 168  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||    
T  15935331 aatgtttgactttatgtaattatgttactaattatgttggttattattttgtaatcactctc 15935270  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 40270420 - 40270352
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 109  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  40270420 tttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggggtgtgatagaat 40270352  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 19183626 - 19183693
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaa 108  Q
    |||||||||||||  |||| |||||||||  || ||||||||||||| ||||| ||||||||||||||    
T  19183626 tttgatgattttcggaccagtctaagcgtttgtgaacctcccgcttcgactgcgggggtgtgatagaa 19183693  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 32119 - 32187
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 109  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  32119 tttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggggtgtgatagaat 32187  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 9932186 - 9932096
Alignment:
Q  20 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 109  Q
    |||||||||||   | |||| ||||||||||||||  |||| |||||| || ||| ||||||||||||| ||||| |||||||||||||||    
T  9932186 caaaggcctaccgcgtgttctttttgatgattttcgaaccagtctaagtgttcgtgaacctcccgcttcgactgcgggggtgtgatagaat 9932096  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 44387578 - 44387668
Alignment:
Q  20 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 109  Q
    ||||| ||||| | |||||| |||||||||||| |  |||| |||||||| | || ||||||||||||| ||||| |||||||||||||||    
T  44387578 caaagtcctacctcgagttctttttgatgatttccgaaccagtctaagcgcctgtgaacctcccgcttcgactgcgggggtgtgatagaat 44387668  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 24210233 - 24210301
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggg-gtgtgatagaat 109  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||||||| || |||||||||    
T  24210233 tttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggagtctgatagaat 24210301  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 45030010 - 45030066
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 98  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||| ||||    
T  45030010 tttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgtgggg 45030066  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 45034861 - 45034917
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 98  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||| ||||    
T  45034861 tttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgtgggg 45034917  T

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Target: scaffold0936 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 3569 - 3658
Alignment:
Q  20 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 109  Q
    ||||||||||| | |||||| |||||||||| ||   |||| | ||||||| ||| |||||||| |||| ||| ||||||||||||||||    
T  3569 caaaggcctacctcgagttctttttgatgatatttggaccagtataagcgttcgtgaacctccctcttcgactccggggtgtgatagaat 3658  T

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Target: scaffold0655 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 5698 - 5642
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 98  Q
    ||||||||||||   |||| ||||||||||||| ||||||||||||| |||||||||    
T  5698 tttgatgatttttggaccagtctaagcgtccgtgaacctcccgcttcgactgcgggg 5642  T

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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 41037 - 41105
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 109  Q
    |||||||| ||||  |||| ||||||||||||| ||||||||||||| ||| | |||||||||||||||    
T  41037 tttgatgactttcggaccagtctaagcgtccgtgaacctcccgcttcgactacgggggtgtgatagaat 41105  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16594886 - 16594954
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcg-gggtgtgatagaat 109  Q
    |||||||||||||  || | |||||| |||||| ||||||||||||| |||||| ||||||||||||||    
T  16594886 tttgatgattttcggactagtctaagtgtccgtgaacctcccgcttcgactgcgagggtgtgatagaat 16594954  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 33166251 - 33166307
Alignment:
Q  42 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 98  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||||||||    
T  33166251 tttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgcgggg 33166307  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 21875350 - 21875304
Alignment:
Q  95 ggggtgtgatagaatgtttgactttatgtaattatgttagtagttat 141  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| ||||    
T  21875350 ggggtgtgataaaatgtttgactttctgtaattatgttcgtaattat 21875304  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 1545912 - 1545864
Alignment:
Q  62 tctaagcgtccgtaaacctcccgcttcaactgcg-gggtgtgatagaat 109  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  1545912 tctaagcgtccgtgaacctcccgcttcgactgcgagggtgtgatagaat 1545864  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 40623336 - 40623381
Alignment:
Q  64 taagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 109  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  40623336 taagcgtccgtgaacctcccccttcgactccggggtgtgatagaat 40623381  T

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