View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21493_low_20 (Length: 353)

Name: NF21493_low_20
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21493_low_20
NF21493_low_20
[»] chr1 (3 HSPs)
chr1 (90-178)||(35848617-35848705)
chr1 (264-339)||(35848791-35848867)
chr1 (19-78)||(35848352-35848411)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 35848617 - 35848705
Alignment:
Q  90 ctttcttatcgtaggcaacaatcctgaatatttctccattctgagacactcgatcactccaagattcgtttaagtataagcgtatgacc 178  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||    
T  35848617 ctttcttatcgtaggcaacaatcctgaatatttctccattccgagacacccgatcactccaagattcgtttaagtatgggcgtatgacc 35848705  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 35848791 - 35848867
Alignment:
Q  264 cgcaagttccatttaaaa-agagagtatgtgtgacatttgaatgttgcaagtgtcagatccctccttttcttttctc 339  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35848791 cgcaagttccatttaaaaaagagagtatgtgtgacatttgaatgttgcaagtgttagatccctccttttcttttctc 35848867  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 35848352 - 35848411
Alignment:
Q  19 atatatgcttactcgtcctactttgagctcctctaaactcaatcatgcaaataaccaaaa 78  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  35848352 atatatgcttactcgtcctactttgaactcatctaaactctatcatgcaaataaccaaaa 35848411  T

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