View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_25 (Length: 312)
Name: NF21493_low_25
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 46 - 291
Target Start/End: Complemental strand, 25042498 - 25042253
Alignment:
| Q |
46 |
tatgtatgaaaatgaatattttttctctaaaaattctagcggcgaaattcacacacgtgagtgttgagaagtaaggaattgcggattttaaccggcaccc |
145 |
Q |
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| T |
25042498 |
tatgtatgaaaatgaatattttttctctaaaaattctagtggcgaaactcacacacgtgagtgttgaggagtaaggaattgcggattttaaccggca-cc |
25042400 |
T |
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| Q |
146 |
ccaaaatatcaaatttcttgtaatatgttaacatataagttttatttgggaa-annnnnnnnnnnnactcttttaaaaacatagcatgctccaaaggagt |
244 |
Q |
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| T |
25042399 |
ccaaaatatcaaatttcttttaatatgttaacatataagttttatttgggaacaatttttttttttactcttttaaaaacatagcatgctccaaaggagt |
25042300 |
T |
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| Q |
245 |
gggcacaagacaagcatactccaattttcatttgtctctcatgtctt |
291 |
Q |
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| T |
25042299 |
gggcacaagacaagcatactccaattttcatttgtctctcatgtctt |
25042253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 25042542 - 25042577
Alignment:
| Q |
3 |
gagaatttaaaattggagtgtgttcgtctttgtctt |
38 |
Q |
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| T |
25042542 |
gagaatttaaaattggagtgtgttcgtctttgtctt |
25042577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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