View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_3 (Length: 566)
Name: NF21493_low_3
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 5 - 534
Target Start/End: Original strand, 12696810 - 12697336
Alignment:
| Q |
5 |
atttgatctttgatgcatatgcataaaaggatcaaagaaaatggtattcaagatttgacctttaatgcatatgcagaaaaaggccacagaagatacacaa |
104 |
Q |
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| T |
12696810 |
atttgatctttgatgcatatgcacaaaaggatcaaagaaaatggtattcaagatttgacctttaatgcatatgcagaaaaaggtcacagaagatacacaa |
12696909 |
T |
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| Q |
105 |
aaaggaattaattaatcatcaatcatcatacacaacagaatcagaattaaacaaagggagaaatatatgctaaatttagaatgatctaatataatttcat |
204 |
Q |
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| T |
12696910 |
aaaggaattaattaatcatcaatcatcatacacaacagaatcagaattaaacaaagggagaaatatatgctaaatttagaatgatctaatataatttcat |
12697009 |
T |
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| Q |
205 |
gcaatttttttggagatgatataggatcaatggtagctgannnnnnnnnnnnnnngagactattctaaatttgatgatccaatgaaacaaagaaggaaaa |
304 |
Q |
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| T |
12697010 |
gcaatttttttggagatgatataggatcaatggtagctga-ttttttttttttttgagactattctaaatttgatgatccaatgaaacaaagaaggaaaa |
12697108 |
T |
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| Q |
305 |
atatgctaaatttagaatgaatgtttttggagatgaatatagggatcaatgatatggtttgtgatagaatgaaaaatgaaactgaaatggaatagaggga |
404 |
Q |
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| T |
12697109 |
atatgctaaatttagaatgaatttttttggagatgaatatagggatcaatgatatggtttgtgatagaatgaaaaatgaaactgaaatggaatagaggga |
12697208 |
T |
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| Q |
405 |
aagattttgggttttgtgatttggaagactttgaaagaagaagaacacaaaaatggtttaaggtgaaactgaaatgtctgtg-nnnnnnncttgttatgg |
503 |
Q |
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| T |
12697209 |
aagattttgggttttgtgatttggaagactttga---aagaagaatacaaaaatggtttaaggtgaaactgaaatgtctctgttttttttcttgttttgg |
12697305 |
T |
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| Q |
504 |
ataccaagtcagcttggtcccactactgaca |
534 |
Q |
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| T |
12697306 |
ataccaagtcagcctggtcccactactgaca |
12697336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 12696754 - 12696837
Alignment:
| Q |
1 |
aaaaatttgatctttgatgcatatgcataaaaggatcaaagaaaatggtattcaagatttgacctttaatgcatatgcagaaaa |
84 |
Q |
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| T |
12696754 |
aaaaatttgatctttgatgcatatgcacaaaagggtcaaagaaaatgatattaaatatttgatctttgatgcatatgcacaaaa |
12696837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 12696703 - 12696785
Alignment:
| Q |
2 |
aaaatttgatctttgatgcatatgcataaaaggatcaaagaaaatggtattcaagatttgacctttaatgcatatgcagaaaa |
84 |
Q |
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| T |
12696703 |
aaaatttgatctttgttacatatgcacaaaagggtcacagaatatggtattaaaaatttgatctttgatgcatatgcacaaaa |
12696785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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