View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_5 (Length: 542)
Name: NF21493_low_5
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Complemental strand, 19196238 - 19195724
Alignment:
| Q |
12 |
agtagcaaaggatagaaaaggattacaaagcaagaattggaaaggctggggaaaaaagccatcagagagcacnnnnnnnnncccaaacagctagcatgac |
111 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19196238 |
agtaccaaaagatagaaaaggattacaaagcaagaattggaaaggctggggaaaaaagccatcagagagcacaaaaaaaaccccaaacagctagcatgac |
19196139 |
T |
|
| Q |
112 |
agtgtccaaagagcacaaaaagtcagcaccaaaacctaccctggctgtcacacggctagcnnnnnnnnnnctatgaaaatcacctttccgactgttcaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
19196138 |
agtgtccaaagagcacaaaaagtcagcaccaaaacctaccctcgctgtcacacggctagcaaaaaaaaaactatgaaaatcacctttcctactgttcaca |
19196039 |
T |
|
| Q |
212 |
aataccatgtgactaacatctagcacatgtgaacttctaagctgaagtatttgactcatgcactataaaaaagaccttataagtttatacaacgctatga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19196038 |
aataccatgtgactaacatctagcacatgtgaacttctaagctgaagtatttgactcacgcactataaaaaagaccttataagtttatacaacgctatga |
19195939 |
T |
|
| Q |
312 |
agagttgttgttaaatattgaaatcagtatttgagagtggtgttgtcaatcgtggatcgctgatcacaaaggtttgtctagacccaacctaggaattgtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19195938 |
agagttgttgttaaatattgaaatcagtatttgagagtggtgttgtcaatcgtggatcgctgatcacaaaggtttgtctagacccaacctaggaattgtt |
19195839 |
T |
|
| Q |
412 |
agcgcctggaggaatcgaacccgagaccttgataggaacacggtttgaggtctgaagcctacaccaccaaaccaactctagggggttctactgccgctat |
511 |
Q |
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| T |
19195838 |
agcgcctggaggaatcgaacccaagaccttgataggaacacggtttgaggtctgaagcctacaccaccaaaccaactctagggggttctactgccgctat |
19195739 |
T |
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| Q |
512 |
ctgacagcaccattt |
526 |
Q |
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| T |
19195738 |
ctgacagcaccattt |
19195724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 222 - 359
Target Start/End: Complemental strand, 19253476 - 19253339
Alignment:
| Q |
222 |
gactaacatctagcacatgtgaacttctaagctgaagtatttgactcatgcactataaaaaagaccttataagtttatacaacgctatgaagagttgttg |
321 |
Q |
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||||||||||| | ||||| ||||||||||| |||||||| |||||||| | ||||||||||||||||||| |||||||||| | | || |||||| ||| |
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| T |
19253476 |
gactaacatctggtacatgcgaacttctaagatgaagtatctgactcataccctataaaaaagaccttatacgtttatacaatgttgtggagagttattg |
19253377 |
T |
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| Q |
322 |
ttaaatattgaaatcagtatttgagagtggtgttgtca |
359 |
Q |
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| T |
19253376 |
ttaaatattgaaatcagtatttgagagcagtgttgtca |
19253339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 511
Target Start/End: Complemental strand, 19253337 - 19253220
Alignment:
| Q |
382 |
ggtttgtctagacccaacctaggaattgttagcgcctggaggaatcgaacccgagaccttgataggaacacggtttgaggtctgaagcctacaccaccaa |
481 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||||||| |||||| |
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| T |
19253337 |
ggtttgtctagacccaatttaggaattgttagcgcagggaggaatcgaacctgagac------------acggtttgaggtcagaagcctacatcaccaa |
19253250 |
T |
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| Q |
482 |
accaactctagggggttctactgccgctat |
511 |
Q |
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|||||| | ||||||||||||||| |||| |
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| T |
19253249 |
accaaccttggggggttctactgccactat |
19253220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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