View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_8 (Length: 494)
Name: NF21493_low_8
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 46184413 - 46184891
Alignment:
| Q |
1 |
atttgaggctgttcctgtcagcattgagcctgcagcagctcggatgacaacattgcatggcagtagccggatccataggcggggttcttggttagatcgt |
100 |
Q |
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| T |
46184413 |
atttgaggctgttcctgtcagcattgtgcctgcagcagctgggatgacaacattacatggcagtagccggatccataggcggggttcttggttagatcgt |
46184512 |
T |
|
| Q |
101 |
gtaacaacgagctggtagtctcgagaacagctactgtaagtgattcaaattatttgaaagcactcacgaatgtgtgggactgttctattccatcaaaagt |
200 |
Q |
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| T |
46184513 |
gtaacaacgagctggtagtctcgagaacagctactgtaagtgattaaaattatttgaaagcactcacgaatgtgtggaactgttcttttccatcaaaagt |
46184612 |
T |
|
| Q |
201 |
aggagattgttgcatgggagacttcctacaaaagtggatctttggcgaagtagcttcataactcataagaatggttttgatgaatttgaatacccctttt |
300 |
Q |
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| T |
46184613 |
aggagattgttgcatgggagacttcctacaaaagtggatctttggcgaagtagcttcataactcattagaatggttttgatgaatttgaatacccctttt |
46184712 |
T |
|
| Q |
301 |
actctcaagtctcgtgaattatcaaacaaagaaaaaccaagataaagtattgaactatatattcatatgctacaatatgcacactaaactcaacctttgt |
400 |
Q |
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| T |
46184713 |
actctcaagtctcgtgaattatcaaacaaagaaaaaccaagataaagtattgaactatatattcatatgctacaatatgcacactaaactcaacctttgt |
46184812 |
T |
|
| Q |
401 |
ccatgaatgtggcctcaagatcaaatttggtaagctcccgttgtattcctcctttttaaacgttattggacctgcaaca |
479 |
Q |
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| T |
46184813 |
ccatgaatgtggcctcaagatcaaatttggtaagctcccgttgtattcctcatttttaaacgttattggacctgcaaca |
46184891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 5858282 - 5858213
Alignment:
| Q |
392 |
aacctttgtccatgaatgtggcctcaagatcaaatttggtaagctcccgttgtattcctcctttttaaac |
461 |
Q |
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| T |
5858282 |
aacctttgtccaggaatgtggcttcaagatcagattaggcaggctcccattgtattcctcctttttaaac |
5858213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 5865002 - 5864938
Alignment:
| Q |
393 |
acctttgtccatgaatgtggcctcaagatcaaatttggtaagctcccgttgtattcctccttttt |
457 |
Q |
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| T |
5865002 |
acctttgtccatgaatgttgcctcaagatcagattaggcaggctcccattgtattcctccttttt |
5864938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 477
Target Start/End: Complemental strand, 5878029 - 5877945
Alignment:
| Q |
393 |
acctttgtccatgaatgtggcctcaagatcaaatttggtaagctcccgttgtattcctcctttttaaacgttattggacctgcaa |
477 |
Q |
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||||||||||| ||| |||||||||||||| ||| || | ||| || ||||| | ||||||||||||| | ||||||||||||| |
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| T |
5878029 |
acctttgtccaagaagctggcctcaagatcagattaggaacgcttccattgtaatactcctttttaaacataattggacctgcaa |
5877945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 7019399 - 7019342
Alignment:
| Q |
393 |
acctttgtccatgaatgtggcctcaagatcaaatttggtaagctcccgttgtattcct |
450 |
Q |
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|||||||||||||||||||||||||||| |||| | || | ||||||||||| |||| |
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| T |
7019399 |
acctttgtccatgaatgtggcctcaagaccaaactaggcacactcccgttgtactcct |
7019342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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