View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21493_low_9 (Length: 472)
Name: NF21493_low_9
Description: NF21493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21493_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 36293765 - 36294003
Alignment:
| Q |
17 |
aaagagtgtattaagactaattctatgatgtacaaggataggaggtatagatcttgtaagttannnnnnnngacaaacagtaattaaattattgaattgt |
116 |
Q |
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| T |
36293765 |
aaagagtgtattaagactaattctatgatgtacaaggataggaggtatagaccttgtaagttattttttttgacaaacaataattaaattattgaattgt |
36293864 |
T |
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| Q |
117 |
gaaccaatgttttaattggagatttcttgttccataagaaaagaattgaagaaaattctgtctctttgcgtataaacataacagagatattggtcagttt |
216 |
Q |
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| T |
36293865 |
gaaccaatgttttaattggagatttcttgttccataagaaaagaattgaagaaaattctgtctctttgcgtataaacataacagagatattggtcagttt |
36293964 |
T |
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| Q |
217 |
tatacgtaaggtgctattataagtagttattttatgaga |
255 |
Q |
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| T |
36293965 |
tatacgtaaggtgctattataagtagttattttatgaga |
36294003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 36294069 - 36294021
Alignment:
| Q |
422 |
ttggtttattatcagaagttgtgcacattggactaatatcttatcacataa |
472 |
Q |
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| T |
36294069 |
ttggtttattatcagaagttgtgcacattggacca--atcttatcacataa |
36294021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 36294193 - 36294150
Alignment:
| Q |
263 |
ttagattatgctgtttatcacctaatttgttgcatacagtgtat |
306 |
Q |
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| T |
36294193 |
ttagattatgctatgtatcacctaatttgttgcatatagtgtat |
36294150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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