View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21494_high_2 (Length: 545)
Name: NF21494_high_2
Description: NF21494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21494_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 3886853 - 3886321
Alignment:
| Q |
1 |
tttacaaacgacagaaacacacaaggatcatgtacaaatcgagcctgcagggaaaagatctattagactcatcaaaactcaaaactttgcttaattaatt |
100 |
Q |
| |
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|||||||||||| || |||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3886853 |
tttacaaacgactgatacacacgaggagcgtgtacaaatcgagcctgcatggaaaagatctattagactcatcaaaactcaaaa-tttgcttaattaatt |
3886755 |
T |
|
| Q |
101 |
caacattgaaaacatatatgtgtaagagaatatataattcaacattatatccgtgattatttctctactattttc--caag-----aagcccatccagcc |
193 |
Q |
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|||||||||||| |||| | | || | | |||||||||| |||||||||||||||||||||| | || | | |||||||||||| |
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| T |
3886754 |
caacattgaaaa----tatgcttcttacaagacctttatcaacattatgtccgtgattatttctctactatcagcagcatgttatcacgcccatccagcc |
3886659 |
T |
|
| Q |
194 |
ttgtgtgtctaatgatgataatatgcttcttg-aagacgtttttaaaaggatgaattgaaggaggcaatttttagtatacatcccaacaagtctctaggt |
292 |
Q |
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||| ||||| ||||||||||||||||||||| ||||| ||| | |||||||||||| |||||||||||||| |||||||||| | |||| ||||| || |
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| T |
3886658 |
ttgcgtgtcaaatgatgataatatgcttcttacaagacctttatcaaaggatgaatttaaggaggcaattttaagtatacatcacgacaaatctctgagt |
3886559 |
T |
|
| Q |
293 |
tccgacggtcttaattcgagtttctatcagcatttttggggtgatctaaaagatga---attgtttgagtctgcgccctcctagttgaattcaggtgctt |
389 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||| ||||||||||| ||| || |||||| || || || |||| ||||||||||||||||||| |
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| T |
3886558 |
cccgacggtcttaattcgattttcaatcagcattttcggggtgatctaggagaggattaattgttcgactccgcatcctcatagttgaattcaggtgctt |
3886459 |
T |
|
| Q |
390 |
tccctttccatttcaacgatactcacattgttttgactcctaaaggttatcgttcggaaactatcaagatcttcaccatatttctttatgcaatgtcctt |
489 |
Q |
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| T |
3886458 |
tcccttcccatctcaacgatgctcacattgttttgactcctaaaggtgatcatctggaaactatcaagaccttcaccatatttctttatgcaatgtcgtt |
3886359 |
T |
|
| Q |
490 |
tacaaaattatctccaaagttttggctaatagtcttag |
527 |
Q |
| |
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|||||||| |||| |||||||||||||||| ||||||| |
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| T |
3886358 |
tacaaaatcatcttcaaagttttggctaatcgtcttag |
3886321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 3900154 - 3899969
Alignment:
| Q |
1 |
tttacaaacgacagaaacacacaaggatcatgtacaaatcgagcctgcagggaaaagatctattagactcatcaaaactcaaaactttgcttaattaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3900154 |
tttacaaacgacagaaacacacaaggatcatgtgcaaatcgagcctgcagggaaaagatctattagactcatcaaaactcaaaactttgcttaattaatt |
3900055 |
T |
|
| Q |
101 |
caacattgaaaacatatatgtgtaagagaatatataattcaacattatatccgtgattatttctctactattttccaagaagccca |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
3900054 |
caacattgaaaacatatatgtgtaagagaatatataattcaacattatgtccgtgattatttctctactgtcttccaagaagccca |
3899969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 3899944 - 3899841
Alignment:
| Q |
182 |
gcccatccagccttgtgtgtctaatgatgataatatgcttcttgaagacgtttttaaaaggatgaattgaaggaggcaatttttagtatacatcccaaca |
281 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3899944 |
gcccatccagccttgcgtgtctaatgatgataatatgcttcttcaagacatttttaaaaggatgaatttaaggaggcaatttttagtatacatcccaaca |
3899845 |
T |
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| Q |
282 |
agtc |
285 |
Q |
| |
|
|||| |
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|
| T |
3899844 |
agtc |
3899841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 3860326 - 3860214
Alignment:
| Q |
1 |
tttacaaacgacagaaacacacaaggatcatgtacaaatcgagcctgcagggaaaagatctattagactcatcaaaactcaaaactttgcttaattaatt |
100 |
Q |
| |
|
|||| |||||| |||||||| |||| ||| || ||||||| ||||||||||||| |||||||||||||||||||||| |||| |||| || ||||||| |
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| T |
3860326 |
tttataaacgatggaaacacatgaggagcatttagaaatcgatcctgcagggaaaatatctattagactcatcaaaacttaaaattttggttgattaatt |
3860227 |
T |
|
| Q |
101 |
caacattgaaaac |
113 |
Q |
| |
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||||||||||||| |
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| T |
3860226 |
caacattgaaaac |
3860214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 524
Target Start/End: Original strand, 25897011 - 25897080
Alignment:
| Q |
455 |
aagatcttcaccatatttctttatgcaatgtcctttacaaaattatctccaaagttttggctaatagtct |
524 |
Q |
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| T |
25897011 |
aagaccttcgccctatctctttatgcaatgtcctctacaaaatgatctccaaagttttggctaatcgtct |
25897080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 16068204 - 16068114
Alignment:
| Q |
36 |
aaatcgagcctgcagggaaaagatctattagactcatcaaaactcaaaactttgct---taattaattcaacattgaaaacatatatgtgt |
123 |
Q |
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|||||||| ||||| | ||||||||||||||||||||||||||| |||| ||| | | |||||||| ||||||||||||||||||||| |
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| T |
16068204 |
aaatcgagtctgcatgaaaaagatctattagactcatcaaaactgaaaaatttcattgattattaattctacattgaaaacatatatgtgt |
16068114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 16071517 - 16071437
Alignment:
| Q |
36 |
aaatcgagcctgcagggaaaagatctattagactcatcaaaactcaaaactttgcttaattaattcaacattgaaaacata |
116 |
Q |
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|||||||| ||||| | |||| ||||||||||||| |||||||| ||| ||| | |||||||| |||||||||||||| |
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| T |
16071517 |
aaatcgagtctgcatgaaaaacatctattagactcgtcaaaactgaaatatttcatcgattaattctacattgaaaacata |
16071437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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