View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21494_low_1 (Length: 569)
Name: NF21494_low_1
Description: NF21494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21494_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 3873051 - 3873588
Alignment:
| Q |
13 |
aatatttagagtattagagaaaccaatnnnnnnnnttattacaacattannnnnnngaatgtcttttatcacattaattaccaacacacaccataagaga |
112 |
Q |
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| T |
3873051 |
aatatttagagtattagagaaaccaataaaaaaaattattacatcattatttttttgaatgtcttttatcacattaattaccaacacacaccataagaaa |
3873150 |
T |
|
| Q |
113 |
aatcgatattattcaacacaaccttgactttatgaccaatataaataaaaaacttactcatattaatgaagatgattcaaatacaattgtggatccgaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
3873151 |
aatcgatattattcaacacaaccttgactttatgaccaatataaataaaaaacttactcataataatgaagatgattcaaatacaattgtggatcccaat |
3873250 |
T |
|
| Q |
213 |
aatacagtcgatctcatttcaaaaatatttgcaaaattatattttaatcatttaaatatattagagtctttatttacctcttagctgacctataggttag |
312 |
Q |
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| T |
3873251 |
aatacagtcgatctcatttcaaaaatatttgcaaaattatattttaatcatttaaatatattagagtctttatttacctctcagctgacctataggttag |
3873350 |
T |
|
| Q |
313 |
ataattcaaaggtttagggcaacaaaagtgaacatttaaaaaatttcactacacgttttaattagatgctaattgattcatcaagtattaaagttatgtt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3873351 |
ataattcaaaggtttagggcaacaaaagtgaacatttaaaaaatttcactacacgttttaattagatgctaattgattcatcaagtataaaagttatgtt |
3873450 |
T |
|
| Q |
413 |
nnnnnnntaataaatccaagaagaaaaacacaactcatttgaacaacaacatattagaaaaattcagatctaattttaagtaatcaacataaagcaagaa |
512 |
Q |
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|| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
3873451 |
aaaaaaa-aaaaaatcaaggaagaaaaacacaactcatttgaacaacaacatattagaaaaattcagatctaatttgaagaaatcaacataaagcaagaa |
3873549 |
T |
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| Q |
513 |
catgagttctaagcttcgtgaaagagatcatcagctatg |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3873550 |
tatgagttctaagcttcgtgaaagagatcatcagctatg |
3873588 |
T |
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