View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21494_low_3 (Length: 527)
Name: NF21494_low_3
Description: NF21494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21494_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 64 - 512
Target Start/End: Original strand, 14736124 - 14736572
Alignment:
| Q |
64 |
agtaatgtcgcatatattgtgatgagtagagagaagtatagttaacgggaccatcaaccgggttattgggagatcgtatgcgatattaagagacttaatg |
163 |
Q |
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| T |
14736124 |
agtactgtcgcatatattgggatgagtagagagaagtatagttaacgggaccatcaaccgggttattgggagatcgtatgcgatattcagagacttaatg |
14736223 |
T |
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| Q |
164 |
aaggtattcaagtgttagtgacctaagacagagttgtacaaataagtggattaaggaacttactaacaaatgccaaatgtattggcgtgtttggttttgt |
263 |
Q |
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| T |
14736224 |
aaggtattcaagtgttagtgacctaagacagagttgtacaaataagtggattaaggaacttactaacaaatgtcagatgtattggcgtgtttggttttgt |
14736323 |
T |
|
| Q |
264 |
ttttctccatctccgaggtgtatgagccaccacataaatcataaccaaggaaatgtgttatggaaattattcagcttgaggaattgaagattttctgatt |
363 |
Q |
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| T |
14736324 |
ttttctctatctccgaggtgtatgagccaccacacaaatcataaccaagaaaatgtgttatggaaattattcagcttgaggaattgaagattttctgatt |
14736423 |
T |
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| Q |
364 |
ttggaaaagcacccatttatctatcaacccaagttagatatttttgaatgctatgtcgtcaagaccaagattaggaacgtcatttaagaatattcaccga |
463 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14736424 |
ttggaaaagcactcatttatctatcaacccaagttagatatttttgaatgatatgtcgtcaagaccaagattaggaacgtcatttaagaatattcaccga |
14736523 |
T |
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| Q |
464 |
aatttgaatatctctctaaagacttgaggaaagatatgaatgacacagg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14736524 |
aatttgaatatctctctaaagacttgaggaaagatatgaatgacacagg |
14736572 |
T |
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