View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21494_low_4 (Length: 399)
Name: NF21494_low_4
Description: NF21494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21494_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 37961527 - 37961139
Alignment:
| Q |
9 |
accattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961527 |
accattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttcc |
37961428 |
T |
|
| Q |
109 |
ttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37961427 |
ttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccaaaa |
37961328 |
T |
|
| Q |
209 |
caccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagat |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961327 |
caccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagat |
37961228 |
T |
|
| Q |
309 |
gctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcgtcatccctataatggctattca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37961227 |
gctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcatcatccctataatggctattca |
37961139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 27 - 396
Target Start/End: Original strand, 37906556 - 37906928
Alignment:
| Q |
27 |
ttcttcgacataccatggttttattgtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttc |
123 |
Q |
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| T |
37906556 |
ttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttc |
37906655 |
T |
|
| Q |
124 |
ccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacat |
223 |
Q |
| |
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| ||||||||||||||||||||| ||||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| ||| |
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| T |
37906656 |
ctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcat |
37906755 |
T |
|
| Q |
224 |
acgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcac |
323 |
Q |
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||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37906756 |
acgttaccttgatgaagactctatttccttcactgtagctgaatcctcagcagacttcaacatcctcgtatctgattcacaagatgctcaaaactggcac |
37906855 |
T |
|
| Q |
324 |
catcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcgtcatccctataatggctattc |
396 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||| |
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| T |
37906856 |
catctcgttccaaatttacctccacctcgtaccgaacaagacaacattcgtgttatccctataatgtctattc |
37906928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 37914759 - 37915057
Alignment:
| Q |
64 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
163 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37914759 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
37914858 |
T |
|
| Q |
164 |
cttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagct |
263 |
Q |
| |
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||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
37914859 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatctccttcaccatagct |
37914958 |
T |
|
| Q |
264 |
gaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaa |
362 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
37914959 |
gaatcctcagcagacttcaacatcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaa |
37915057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 3782810 - 3782967
Alignment:
| Q |
9 |
accattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttcc |
108 |
Q |
| |
|
|||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| || | |
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| T |
3782810 |
accattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcactttc |
3782909 |
T |
|
| Q |
109 |
ttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
166 |
Q |
| |
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| ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |
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|
| T |
3782910 |
tccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 3783017 - 3783084
Alignment:
| Q |
216 |
ccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa |
283 |
Q |
| |
|
||||| ||||| |||||| ||| ||||||| ||||||||||| | |||||||||| |||| ||||||| |
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|
| T |
3783017 |
ccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttagcaaacttcaa |
3783084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
87 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
181 |
Q |
| |
|
|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
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|
| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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