View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21495_high_1 (Length: 465)
Name: NF21495_high_1
Description: NF21495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21495_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 27 - 449
Target Start/End: Complemental strand, 33033343 - 33032921
Alignment:
| Q |
27 |
ttagcttgcgtgacatactagggagacaggaaccttgcttgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaacta |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33033343 |
ttagcttgcgtgacatactagggagacaggaaccttgcttgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaacta |
33033244 |
T |
|
| Q |
127 |
tcaacaaaataggttacataatgtttgcagattctttttatttcattgcattgcttagaatgcactttctcttgaaccattaagctttgaaatgagataa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33033243 |
tcaacaaaataggttacataatgtttgcagattctttttatttcattgcattgcttagaatgcactttctcttgaaccattaagctttgaaatgagataa |
33033144 |
T |
|
| Q |
227 |
aacttattgttagagctagaaaaacaagcttgaaatttctattttatactctagttttccaagtttacagaagctaacactaatagcaccattttaccac |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33033143 |
aacttattgttagagctagaaaaacaagcttgaaatttctattttatactctagttttccaagtttacagaagctaacactaatagcaccattttaccac |
33033044 |
T |
|
| Q |
327 |
acactttggagtcagttctaaaatattttaagaatttcagaaacagatatagtatagcaacattgagtatagaaaaattcatcaaactttatactaaatt |
426 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33033043 |
acactttggagtcagttctaaaatattttaagaatttcagaaacagatatagtatagcaacattgagtatagaaaaattcatcaaactttatactaaatt |
33032944 |
T |
|
| Q |
427 |
gatgagcattgatagtaacaagg |
449 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33032943 |
gatgagcattgatagtaacaagg |
33032921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 279 - 447
Target Start/End: Complemental strand, 33120641 - 33120473
Alignment:
| Q |
279 |
agttttccaagtttacagaagctaacactaatagcaccattttaccacacactttggagtcagttctaaaatattttaagaatttcagaaacagatatag |
378 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||| || | ||||| |||||||||||| |
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| T |
33120641 |
agtttttcaagtttaaagaagcttacactaattgcatcattttaccacacactttggagtcagttctaatatattctacaattttcaaaaacagatatag |
33120542 |
T |
|
| Q |
379 |
tatagcaacattgagtatagaaaaattcatcaaactttatactaaattgatgagcattgatagtaacaa |
447 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| | | | ||||||||||||| ||||||||||| |
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| T |
33120541 |
tatagcaacaatgagtatagaaaaattcatcaaacgtcacgccaaattgatgagcagagatagtaacaa |
33120473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 300 - 431
Target Start/End: Original strand, 33017467 - 33017598
Alignment:
| Q |
300 |
ctaacactaatagcaccattttaccacacactttggagtcagttctaaaatattttaagaatttcagaaacagatatagtatagcaacattgagtataga |
399 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33017467 |
ctaacactaattgcatcattttaccacacattttggagtcggctctaaaagattttaagaatttcagaaatagatatagtatagcaacattgagtataga |
33017566 |
T |
|
| Q |
400 |
aaaattcatcaaactttatactaaattgatga |
431 |
Q |
| |
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|||||||||||| | |||| |||||||||||| |
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|
| T |
33017567 |
aaaattcatcaagcattatgctaaattgatga |
33017598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 33033777 - 33033676
Alignment:
| Q |
58 |
accttgcttgaacaggatcggtttctagggagacaggaacctaagttcatcacctatagtacaaaactatcaacaaaataggttacataatgtttgcaga |
157 |
Q |
| |
|
||||| |||||| | ||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
33033777 |
accttacttgaatatgattggtttctagggagactggagcctaagttcatcacctataatacaaaactatcaataaaataagaaacataatgtttgcaga |
33033678 |
T |
|
| Q |
158 |
tt |
159 |
Q |
| |
|
|| |
|
|
| T |
33033677 |
tt |
33033676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 33120994 - 33120932
Alignment:
| Q |
110 |
cctatagtacaaaactatcaacaaaataggttac-ataatgtttgcagattctttttatttcat |
172 |
Q |
| |
|
|||||||||||| | |||||| ||||||| |||| |||||||||||||||| |||||||||||| |
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|
| T |
33120994 |
cctatagtacaataatatcaataaaatagattacaataatgtttgcagatt-tttttatttcat |
33120932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 158 - 449
Target Start/End: Original strand, 22366276 - 22366567
Alignment:
| Q |
158 |
ttctttttatttcattgcattgcttagaatgcactttctcttgaaccattaagctttgaaatgagataaaacttattgttagagctagaaaaacaagctt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22366276 |
ttctttttatttcattgcattgcttagaatgcactttctcttgaaccattaagctctgaaatgagataaaacttattgttagagctagaaaaacaagctt |
22366375 |
T |
|
| Q |
258 |
gaaatttctattttatactctagttttccaagtttacagaagctaacactaatagcaccattttaccacacactttggagtcagttctaaaatattttaa |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22366376 |
gaaatttctattttatactctagttttccaagtttacagaagctaacactaatagcaccattttaccacacactttggagtcagttctaaaatattttaa |
22366475 |
T |
|
| Q |
358 |
gaatttcagaaacagatatagtatagcaacattgagtatagaaaaattcatcaaactttatactaaattgatgagcattgatagtaacaagg |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22366476 |
gaatttcagaaacagatatagtatagcaacattgagtatagaaaaattcatcaaactttatgctaaattgatgagcattgatagtaacaagg |
22366567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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