View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21495_high_3 (Length: 204)
Name: NF21495_high_3
Description: NF21495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21495_high_3 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 23482757 - 23482927
Alignment:
| Q |
12 |
gaagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaaggggagatctcaaaaattaaacttcttcaatctaaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23482757 |
gaagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaaggggagatctcaaaaattaaacttcttcaatctaaaa |
23482856 |
T |
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| Q |
112 |
ataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggcc |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23482857 |
ataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggcc |
23482927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 23473260 - 23473432
Alignment:
| Q |
12 |
gaagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaaggggaga-tctcaaaaattaaacttcttcaatctaaa |
110 |
Q |
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|||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
23473260 |
gaagaatatgatgggtttgattttcccaatggcaactcacagtggccggaaaacaagagagaagggggaagtctcaaaaattaaacttctccaatctaaa |
23473359 |
T |
|
| Q |
111 |
aataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccg |
183 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
23473360 |
aataaattgagggcttttgtagaggaagaagagaggaattcaacggtggtggcagggattttaaaggaggccg |
23473432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 34905975 - 34906147
Alignment:
| Q |
12 |
gaagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaagggg-agatctcaaaaattaaacttcttcaatctaaa |
110 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
34905975 |
gaagaatatgttgggtttggttttctcaatggcaactcacggtggccgaaaaacaagagagaagggggagatctcgaaaattaaacttctccaatctaaa |
34906074 |
T |
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| Q |
111 |
aataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccg |
183 |
Q |
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|| ||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
34906075 |
aaaaaattgatggcttttgtagaggaagaagagaggaattcaatggtgatggaggggattttaaaggaggccg |
34906147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 11236160 - 11235988
Alignment:
| Q |
12 |
gaagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaagggg-agatctcaaaaattaaacttcttcaatctaaa |
110 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11236160 |
gaagaatatggtgggtttggttttcccaatggcaactcacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttcttcaatctaaa |
11236061 |
T |
|
| Q |
111 |
aataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccg |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11236060 |
aataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccg |
11235988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 52610359 - 52610188
Alignment:
| Q |
13 |
aagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaagggg-agatctcaaaaattaaacttcttcaatctaaaa |
111 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| || |
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| T |
52610359 |
aagaatatggtgggtttggttttccaaatggcaactcacggtggccggaaaacaagaaagaagggggagatctcaaaaattaaacttctccaatctataa |
52610260 |
T |
|
| Q |
112 |
ataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccg |
183 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52610259 |
ataaattgagggcttttgtagaggaagaagagaggaattcaatggtggtggcggggattttaaaggaggccg |
52610188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 22627861 - 22627932
Alignment:
| Q |
89 |
aattaaacttcttcaatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggt |
160 |
Q |
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|||||||||||| ||||||| |||||||||| |||||||||||||| || ||||||||||| |||| |||| |
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| T |
22627861 |
aattaaacttctccaatctagaaataaattgcgggcttttgtagaggaaagagagaggaatttaatgatggt |
22627932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 37415962 - 37416027
Alignment:
| Q |
102 |
caatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtgggg |
167 |
Q |
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|||||||||||||| || | || | ||| |||| |||||||||| |||| |||||||||||||||| |
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| T |
37415962 |
caatctaaaaataagttaatggttattgaagaggaagaagagagaaatttaatggtggtggtgggg |
37416027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 28656755 - 28656836
Alignment:
| Q |
102 |
caatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccg |
183 |
Q |
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||||||||||||||||| || | ||| ||||| |||||||| ||||||| ||||||| |||||| ||| ||||||||||| |
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| T |
28656755 |
caatctaaaaataaattagtggttattgaagagagagaagagatgaattcattggtggttgtggggttttcaaaggaggccg |
28656836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 3807 - 3865
Alignment:
| Q |
86 |
aaaaattaaacttcttcaatctaaaaataaattgagggcttttgtagagaaagaagaga |
144 |
Q |
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|||||| |||||| | |||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
3807 |
aaaaatcaaacttttccaatctccaaataaattgagggcttttgaagaggaagaagaga |
3865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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