View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21495_low_2 (Length: 296)

Name: NF21495_low_2
Description: NF21495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21495_low_2
NF21495_low_2
[»] chr5 (14 HSPs)
chr5 (18-275)||(29608152-29608410)
chr5 (18-276)||(30476599-30476857)
chr5 (207-277)||(29614310-29614380)
chr5 (19-96)||(29873399-29873476)
chr5 (202-277)||(30520248-30520323)
chr5 (202-277)||(30560588-30560663)
chr5 (175-277)||(30241016-30241118)
chr5 (19-96)||(29854536-29854613)
chr5 (175-276)||(29854692-29854793)
chr5 (175-276)||(29873555-29873656)
chr5 (23-244)||(30401306-30401527)
chr5 (175-239)||(30207903-30207967)
chr5 (175-276)||(17417292-17417393)
chr5 (33-98)||(30207761-30207826)
[»] chr4 (1 HSPs)
chr4 (19-276)||(52353186-52353443)
[»] chr3 (1 HSPs)
chr3 (18-276)||(25292571-25292829)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 29608410 - 29608152
Alignment:
Q  18 caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat 117  Q
    |||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| ||||||||||||| |||||| |||| |||||||||||| ||||    
T  29608410 caccctctcgtagaagaaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgttg-caacgtcaatgtgaaacgcaat 29608312  T
Q  118 gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagc---acgtaaactgcatccttgaac 214  Q
    |||| | |||||||||||||||| || |||||||  || | |   |||| | ||||||||||||||||| | ||||   ||||||||||||||||||||     
T  29608311 gttctaggggttgaaagaggacg-gctcctaagttgagtgaattgaatggatcattgatcaagaatatcatcgagcactacgtaaactgcatccttgaat 29608213  T
Q  215 tgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaa 275  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||    
T  29608212 tgttgtagccatacctttatagagccatctgtgatttgtttgtgctgagcatcttcaagaa 29608152  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 30476599 - 30476857
Alignment:
Q  18 caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat 117  Q
    |||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||| |||||||| || ||||| |  |||  | ||||||||||    
T  30476599 caccctctcgtaaaagaaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaat 30476698  T
Q  118 gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgt 217  Q
    ||||  | |||||||| |||||||| |  |||||| |   ||   |||| |||||| |||||||||||| |  ||||| || || ||||| ||||  |||    
T  30476699 gttctttaggttgaaacaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgt 30476798  T
Q  218 tgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaac 276  Q
    || ||||||||||| ||||||| ||||||||  ||||| |||||| |||||||||||||    
T  30476799 tggagccataccttaatagagcggtctgtgacctgtttctgctcagcatcttcaagaac 30476857  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 29614380 - 29614310
Alignment:
Q  207 ccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614380 ccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacg 29614310  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 29873399 - 29873476
Alignment:
Q  19 accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc 96  Q
    |||||| ||||||| |||||||| |||||| |||| ||| | ||| ||||||||| ||||||||||||| ||||||||    
T  29873399 accctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgcc 29873476  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 30520323 - 30520248
Alignment:
Q  202 tgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacg 277  Q
    |||||| ||||  ||||| ||||||||||||||||||| |||||| || ||||| | |||| ||||||||||||||    
T  30520323 tgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacg 30520248  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 30560663 - 30560588
Alignment:
Q  202 tgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacg 277  Q
    |||||| ||||  ||||| ||||||||||||||||||| |||||| || ||||| | |||| ||||||||||||||    
T  30560663 tgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacg 30560588  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 30241118 - 30241016
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||| ||||| | |||||| |||||  |||| ||||  ||||| ||||||||||| ||||||| ||||||||  ||||| | |||| |||||||||||    
T  30241118 atcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaaga 30241019  T
Q  275 acg 277  Q
    |||    
T  30241018 acg 30241016  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 29854536 - 29854613
Alignment:
Q  19 accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc 96  Q
    |||||| ||||||| |||||||| |||||| |||| ||| | ||| ||| ||||| ||||||||||||| ||||||||    
T  29854536 accctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgcc 29854613  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 29854692 - 29854793
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||| ||||| | |||||| ||||| ||||| ||||  ||||||||||||||||| ||||||  ||||||||  ||||| |  ||| |||||||||||    
T  29854692 atcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttaatagagtggtctgtgacttgtttcttttcagcatcttcaaga 29854791  T
Q  275 ac 276  Q
    ||    
T  29854792 ac 29854793  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 29873555 - 29873656
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||| ||||| | |||||| |||||  |||| ||||  ||||||||||||||||| ||||||| ||||||||  ||||| |  ||| |||||||||||    
T  29873555 atcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccataccttaatagagcggtctgtgacttgtttcttttcagcatcttcaaga 29873654  T
Q  275 ac 276  Q
    ||    
T  29873655 ac 29873656  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 30401306 - 30401527
Alignment:
Q  23 tctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaatgttca 122  Q
    |||||||||||||| |||| |||| | |||| ||| | ||| ||||| ||| ||||||||||||| |||||||| |  | |  | ||||||| ||||||     
T  30401306 tctcgtagaagaaatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttct 30401405  T
Q  123 atgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtag 222  Q
     ||||||||||||| | ||||| | ||||| ||| ||    ||  |||| | |||||| ||||| | |||||| ||||| ||||| ||||  ||||| ||    
T  30401406 ttgggttgaaagagaatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggag 30401505  T
Q  223 ccatacctttatagagccgtct 244  Q
    ||||||||| ||| ||| ||||    
T  30401506 ccataccttaatatagctgtct 30401527  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 30207903 - 30207967
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagc 239  Q
    |||||| ||||| | |||||| ||||| ||||| ||||  |||||||||||||||||||||||||    
T  30207903 atcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagc 30207967  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 276
Target Start/End: Complemental strand, 17417393 - 17417292
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||||||||| |  ||||| |||||  |||| ||||  ||||| |||||||||||  ||||||  |||||||  ||||| |||||| |||||||||||    
T  17417393 atcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatgctcagcatcttcaaga 17417294  T
Q  275 ac 276  Q
    ||    
T  17417293 ac 17417292  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 30207761 - 30207826
Alignment:
Q  33 gaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaa 98  Q
    |||||||||  |||||||||| ||| | ||| || |||||| |||||||||||||||| |||||||    
T  30207761 gaaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaa 30207826  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 52353186 - 52353443
Alignment:
Q  19 accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaatg 118  Q
    ||||||||||||||||||||||| ||| ||||||| || |||||||||||||||| |||| |||||||||||||| |||| ||||    ||||||||||     
T  52353186 accctctcgtagaagaaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaata 52353285  T
Q  119 ttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgtt 218  Q
    ||   ||| ||||| || ||  | ||| |||||| |   ||    ||  |||||| |||||| ||||| | ||| |||||||| ||||| ||||  || |    
T  52353286 ttttttggtttgaatgacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgct 52353385  T
Q  219 gtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaac 276  Q
    | |||||||| || ||||||| ||||||||  ||||| |||||| |||||||||||||    
T  52353386 gaagccatactttaatagagcggtctgtgacttgtttctgctcagcatcttcaagaac 52353443  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 25292829 - 25292571
Alignment:
Q  18 caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat 117  Q
    |||||| ||| ||||||||||||| |||| || ||| ||| | ||| ||||||||| |||||||||||||  |||||||||  | |  ||||||||  ||    
T  25292829 caccctgtcgaagaagaaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgat 25292730  T
Q  118 gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgt 217  Q
    ||||  ||| ||||||||||| ||||| ||||||| |   ||    || || || | |||||| ||||| | |||||| || ||  |||| ||||  |||    
T  25292729 gttctttggtttgaaagaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgt 25292630  T
Q  218 tgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaac 276  Q
    |||||||||||||| |||||||  |||||||  ||||| |||||| |||||||||||||    
T  25292629 tgtagccataccttaatagagcgatctgtgacttgtttctgctcagcatcttcaagaac 25292571  T

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