View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21496_high_2 (Length: 324)
Name: NF21496_high_2
Description: NF21496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21496_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 307
Target Start/End: Complemental strand, 31597340 - 31597036
Alignment:
| Q |
3 |
ataggttcaagtaaactgcataaaaataatatatttatcttactctaattttgannnnnnngagtgatttttgttataggctccctataatgtgctattt |
102 |
Q |
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| T |
31597340 |
ataggttcaagtaaactgcataaaaataatatatttatcttactctaattttgatttttttgagtgatttttgttataggctccctataatgtgctattt |
31597241 |
T |
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| Q |
103 |
tacaaggataaaccaagactaggaactgctttggagttgcttaaagctacacaagagctagaacaaagattggaagaagtaaacttttccatcttagtta |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31597240 |
tacaaggataagccaagactaggaactgctttggagttgcttaaagctacacaagagctagaacaaagattggaagaagtaaacttttccatcttagtta |
31597141 |
T |
|
| Q |
203 |
ctttcttaatttagtacaatttaatcacnnnnnnnctccttaatatgaagatcaactttacatatatataatattctgaataagaatttaataggaatat |
302 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31597140 |
ctttcttaatttagtacaatttaatcactttttttctccttaatatgaagatcagctttacatatatataatattctaaataagaatttaataggaatat |
31597041 |
T |
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| Q |
303 |
atttg |
307 |
Q |
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||||| |
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| T |
31597040 |
atttg |
31597036 |
T |
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