View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21496_low_1 (Length: 553)

Name: NF21496_low_1
Description: NF21496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21496_low_1
NF21496_low_1
[»] chr7 (13 HSPs)
chr7 (18-276)||(21824608-21824871)
chr7 (306-371)||(21824932-21824997)
chr7 (479-547)||(19154238-19154306)
chr7 (479-547)||(20753637-20753705)
chr7 (479-541)||(18362720-18362782)
chr7 (479-538)||(8053123-8053182)
chr7 (479-538)||(8978014-8978073)
chr7 (479-538)||(10611053-10611112)
chr7 (479-534)||(11804055-11804110)
chr7 (479-538)||(12330386-12330445)
chr7 (479-538)||(13756152-13756211)
chr7 (477-534)||(8878332-8878389)
chr7 (506-534)||(1861951-1861979)
[»] scaffold0632 (1 HSPs)
scaffold0632 (46-113)||(4277-4344)
[»] chr1 (8 HSPs)
chr1 (479-547)||(23035700-23035768)
chr1 (481-547)||(44796395-44796461)
chr1 (479-547)||(15527557-15527625)
chr1 (479-538)||(18528252-18528311)
chr1 (505-547)||(26648071-26648113)
chr1 (490-547)||(15812173-15812230)
chr1 (506-538)||(17609943-17609975)
chr1 (479-547)||(26021729-26021797)
[»] chr8 (8 HSPs)
chr8 (479-547)||(14271161-14271229)
chr8 (479-538)||(13314005-13314064)
chr8 (479-547)||(28275812-28275880)
chr8 (479-538)||(23868545-23868604)
chr8 (479-534)||(26139173-26139228)
chr8 (479-538)||(29381369-29381428)
chr8 (479-527)||(26830190-26830238)
chr8 (506-538)||(27660361-27660393)
[»] chr2 (6 HSPs)
chr2 (479-547)||(19199173-19199241)
chr2 (505-538)||(29032207-29032240)
chr2 (479-538)||(13777457-13777516)
chr2 (479-538)||(17350387-17350446)
chr2 (479-538)||(27908179-27908238)
chr2 (506-538)||(28929673-28929705)
[»] chr3 (5 HSPs)
chr3 (490-547)||(3115436-3115493)
chr3 (479-538)||(9780928-9780987)
chr3 (479-534)||(20022594-20022649)
chr3 (479-547)||(8267965-8268033)
chr3 (506-538)||(25851733-25851765)
[»] chr5 (1 HSPs)
chr5 (479-547)||(18831495-18831563)
[»] chr4 (5 HSPs)
chr4 (479-547)||(20828843-20828911)
chr4 (479-538)||(7583329-7583388)
chr4 (479-534)||(11252835-11252890)
chr4 (479-538)||(16730604-16730663)
chr4 (507-547)||(17673010-17673050)
[»] chr6 (2 HSPs)
chr6 (481-538)||(14722967-14723024)
chr6 (506-538)||(9517771-9517803)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 21824608 - 21824871
Alignment:
Q  18 ctatgatcaagtgaatctaataatatcacaaaaactatcgtaggactaaaaactgataatatgataggtttctatagtcaacaaagtaaccgtaataatg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21824608 ctatgatcaagtgaatctaataacatcacaaaaactatcgtcggaacaaaaactgataatatgataggtttctatagtcaacaaagtaaccgtaataatg 21824707  T
Q  118 gatatcaattgctactttaatgtcttttattttctaatactccacaattaaaattagcata-----aggaggagagtgaataattatcattaaatctcat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||||||||||| ||||||||||||||||||||||    
T  21824708 gatatcaattgctactttaatgtcttttattttctaatactccacaattaacattagcatatgatgaggaggagagtaaataattatcattaaatctcat 21824807  T
Q  213 tggtcaatgcttatcaagtatggctaggtcaaatgcaatgattcattacacatacacgaaagat 276  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  21824808 tggtcaattcttatcaagtatggctaggtcaaatgcaatgattcactacacatacacgtaagat 21824871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 21824932 - 21824997
Alignment:
Q  306 ctagaggcaaaacaatgaggaaaaacacatgcatggttaataaggaaaggtttcatgtggttgtgg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21824932 ctagaggcaaaacaatgaggaaaaacacatgcatggttaataaggaaaggtttcatgtggttgtgg 21824997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 19154306 - 19154238
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||| || ||||| || |||||    
T  19154306 tagttaccatgtgtaactaagtagttataggttagagttctaagatgaactcctatttattttgttgga 19154238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 20753705 - 20753637
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||| || ||||| || |||||    
T  20753705 tagttaccatgtgtaactaagtagttataggttagagttctaagatgaactcctatttattttgttgga 20753637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 18362720 - 18362782
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatatt 541  Q
    |||||||||| ||||||||| || |  ||||||||||||||||||| ||| ||||||||||||    
T  18362720 tagttaccatgtgtaactaattatttttaggttagagttctaagataaacctctgtttatatt 18362782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 8053123 - 8053182
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  8053123 tagttaccatgtgtaactaattctttttaggttagagttctaagatgaacctctgtttat 8053182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 8978014 - 8978073
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  8978014 tagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctctgtttat 8978073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 10611112 - 10611053
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| || |  |||||||||||| |||||||||| |||||||||    
T  10611112 tagttaccatgtgtaactaaatatttctaggttagagttataagatgaacctctgtttat 10611053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Complemental strand, 11804110 - 11804055
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgt 534  Q
    |||||||||| ||||||||| || |  ||||||||||||||||||||||| |||||    
T  11804110 tagttaccatgtgtaactaaatatttttaggttagagttctaagatgaacctctgt 11804055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 12330445 - 12330386
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  12330445 tagttaccatgtgtaactaattctttttaggttagagttctaagatgaacctctgtttat 12330386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 13756152 - 13756211
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  || ||||||||| ||||||||||||| |||||||||    
T  13756152 tagttaccatgtgtaactaaatcttcttaggttagatttctaagatgaacctctgtttat 13756211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 534
Target Start/End: Complemental strand, 8878389 - 8878332
Alignment:
Q  477 tatagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgt 534  Q
    |||||||||||| ||||||||| | ||  |||||||||||| |||||||||| |||||    
T  8878389 tatagttaccatgtgtaactaaatcattttaggttagagttataagatgaacctctgt 8878332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 534
Target Start/End: Complemental strand, 1861979 - 1861951
Alignment:
Q  506 taggttagagttctaagatgaacttctgt 534  Q
    |||||||||||||||||||||||||||||    
T  1861979 taggttagagttctaagatgaacttctgt 1861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 4344 - 4277
Alignment:
Q  46 caaaaactatcgtaggactaaaaactgataatatgataggtttctatagtcaacaaagtaaccgtaat 113  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4344 caaaaactatcgtatgaccaaaaactaataatatgataggtttctatagtcaacaaagtaaccttaat 4277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 23035700 - 23035768
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||| || |||||    
T  23035700 tagttaccatgtgtaactaagtagttataggttagagttctaagatgaacctctgtttattttgttgga 23035768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 44796461 - 44796395
Alignment:
Q  481 gttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||| |||||||||||| | |||||| |||||||||||| |||||||| ||||| || |||||    
T  44796461 gttaccatgtgtaactaagtagttataggtgagagttctaagacgaacttctatttattttgttgga 44796395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 15527557 - 15527625
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| | ||||||| || | ||||||||||||||||||||||||| || ||||| || |||||    
T  15527557 tagttaccatgtataactaaatagttataggttagagttctaagatgaactcctatttattttgttgga 15527625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 18528252 - 18528311
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  18528252 tagttaccatgtgtaactaattctttttaggttagagttctaagatgaacctctgtttat 18528311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 547
Target Start/End: Original strand, 26648071 - 26648113
Alignment:
Q  505 ataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||||||||||||||||| ||||||||| || |||||    
T  26648071 ataggttagagttctaagatgaacctctgtttattttgttgga 26648113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 15812173 - 15812230
Alignment:
Q  490 tgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    ||||||||| || | ||||||||||||||||||||||||| || ||||| || |||||    
T  15812173 tgtaactaattagttataggttagagttctaagatgaactcctatttattttgttgga 15812230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Original strand, 17609943 - 17609975
Alignment:
Q  506 taggttagagttctaagatgaacttctgtttat 538  Q
    ||||||||||||||||||||||| |||||||||    
T  17609943 taggttagagttctaagatgaacctctgtttat 17609975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 26021797 - 26021729
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| ||||||||| || |  |||||||  |||||||||||||| ||||||||| || |||||    
T  26021797 tagttaccatgtgtaactaaatattattaggttatggttctaagatgaacctctgtttattttgttgga 26021729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 14271229 - 14271161
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| |||||||||||| | |||||||| |||||||||||||||| || ||||  ||||||||    
T  14271229 tagttaccatgtgtaactaagtagttataggttaaagttctaagatgaactcctatttaatttcttgga 14271161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 13314005 - 13314064
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  |||||||||||||||||||||||||||||||||    
T  13314005 tagttaccatgtgtaactaattctttttaggttagagttctaagatgaacttctgtttat 13314064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 28275812 - 28275880
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||| |||||||||||| | ||||||||||||| |||||| |||| || ||||| || |||||    
T  28275812 tagttaccatgtgtaactaagtagttataggttagagttataagattaactcctatttatttttttgga 28275880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 23868545 - 23868604
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  23868545 tagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctctgtttat 23868604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Complemental strand, 26139228 - 26139173
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgt 534  Q
    |||||||||| ||||||||| || |  ||||||||||||||||||||||| |||||    
T  26139228 tagttaccatttgtaactaaatatttttaggttagagttctaagatgaacctctgt 26139173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 29381369 - 29381428
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  29381369 tagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctctgtttat 29381428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 26830190 - 26830238
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaa 527  Q
    |||||||||| ||||||||| ||||  |||||||||||| |||||||||    
T  26830190 tagttaccatgtgtaactaaataattttaggttagagttgtaagatgaa 26830238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Complemental strand, 27660393 - 27660361
Alignment:
Q  506 taggttagagttctaagatgaacttctgtttat 538  Q
    ||||||||||||||||||||||| |||||||||    
T  27660393 taggttagagttctaagatgaacctctgtttat 27660361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 19199173 - 19199241
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    ||||||||||| ||||||||||| | ||| |||||||||||||||||||| | ||||||| || |||||    
T  19199173 tagttaccataggtaactaagtagttataagttagagttctaagatgaacctttgtttattttgttgga 19199241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 538
Target Start/End: Complemental strand, 29032240 - 29032207
Alignment:
Q  505 ataggttagagttctaagatgaacttctgtttat 538  Q
    ||||||||||||||||||||||||||||||||||    
T  29032240 ataggttagagttctaagatgaacttctgtttat 29032207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 13777516 - 13777457
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| || | ||||||||||||||||| | ||||| ||||||||    
T  13777516 tagttaccatgtgtaactaaatacttataggttagagttctaaaaagaactcctgtttat 13777457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 17350446 - 17350387
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  17350446 tagttaccatgtgtaactaattctttttaggttagagttctaagatgaacctctgtttat 17350387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 27908179 - 27908238
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  27908179 tagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctctgtttat 27908238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Complemental strand, 28929705 - 28929673
Alignment:
Q  506 taggttagagttctaagatgaacttctgtttat 538  Q
    ||||||||||||||||||||||| |||||||||    
T  28929705 taggttagagttctaagatgaacctctgtttat 28929673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 3115436 - 3115493
Alignment:
Q  490 tgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||||| | ||||||||||||||||||||||||| || ||||| || |||||    
T  3115436 tgtaactaagtagttataggttagagttctaagatgaactcctatttattttgttgga 3115493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Original strand, 9780928 - 9780987
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||||||||||||| |  |  ||||||||||||||||||||||| ||| |||||    
T  9780928 tagttaccatatgtaactaattctttttaggttagagttctaagatgaacctctatttat 9780987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Original strand, 20022594 - 20022649
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgt 534  Q
    |||||||||| ||||||||| | ||  ||||||||||||||||||||||| |||||    
T  20022594 tagttaccatgtgtaactaaatcattttaggttagagttctaagatgaacctctgt 20022649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 8268033 - 8267965
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||| ||| ||||||||  |||| ||||||||| |||||||||||||| ||| ||||| || |||||    
T  8268033 tagttatcatgtgtaactagataattataggttagggttctaagatgaacctctatttattttattgga 8267965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Original strand, 25851733 - 25851765
Alignment:
Q  506 taggttagagttctaagatgaacttctgtttat 538  Q
    ||||||||||||||||||||||| |||||||||    
T  25851733 taggttagagttctaagatgaacctctgtttat 25851765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 18831563 - 18831495
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    ||||||| || ||||||||| || | |||||||||||||||||||||||||  ||||||| || |||||    
T  18831563 tagttacgatgtgtaactaaatagttataggttagagttctaagatgaactcttgtttattttgttgga 18831495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 20828843 - 20828911
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    ||||||||||  ||||||||| ||| |||||||| |||||||||||||||| || ||||| || |||||    
T  20828843 tagttaccatgagtaactaagcaattataggttatagttctaagatgaactcctatttattttgttgga 20828911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 7583388 - 7583329
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  7583388 tagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctctgtttat 7583329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Original strand, 11252835 - 11252890
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgt 534  Q
    |||||||||| ||||||||| || |  ||||||||||||||||||||||| |||||    
T  11252835 tagttaccatgtgtaactaaatatttttaggttagagttctaagatgaacctctgt 11252890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 538
Target Start/End: Complemental strand, 16730663 - 16730604
Alignment:
Q  479 tagttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||||| ||||||||| || |  ||||||||||||||||||||||| ||| |||||    
T  16730663 tagttaccatgtgtaactaattatttttaggttagagttctaagatgaacctctatttat 16730604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 17673050 - 17673010
Alignment:
Q  507 aggttagagttctaagatgaacttctgtttatattcttgga 547  Q
    |||||||||||||||||||||| ||||||||| || |||||    
T  17673050 aggttagagttctaagatgaacctctgtttattttgttgga 17673010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 14723024 - 14722967
Alignment:
Q  481 gttaccatatgtaactaagtaatcataggttagagttctaagatgaacttctgtttat 538  Q
    |||||||| ||||||||| |  |  ||||||||||||||||||||||| |||||||||    
T  14723024 gttaccatgtgtaactaaatttttttaggttagagttctaagatgaacctctgtttat 14722967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Complemental strand, 9517803 - 9517771
Alignment:
Q  506 taggttagagttctaagatgaacttctgtttat 538  Q
    ||||||||||||||||||||||| |||||||||    
T  9517803 taggttagagttctaagatgaacatctgtttat 9517771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University