View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21496_low_3 (Length: 290)
Name: NF21496_low_3
Description: NF21496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21496_low_3 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 31320245 - 31320521
Alignment:
| Q |
14 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
113 |
Q |
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| T |
31320245 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31320344 |
T |
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| Q |
114 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
213 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
31320345 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31320444 |
T |
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| Q |
214 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaataccagaaagaagaagaaatgttt |
290 |
Q |
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| T |
31320445 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgttt |
31320521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 31332498 - 31332774
Alignment:
| Q |
14 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
113 |
Q |
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| T |
31332498 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31332597 |
T |
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| Q |
114 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
213 |
Q |
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| T |
31332598 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31332697 |
T |
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| Q |
214 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaataccagaaagaagaagaaatgttt |
290 |
Q |
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| T |
31332698 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgttt |
31332774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 3425 - 3149
Alignment:
| Q |
14 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
3326 |
T |
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| Q |
114 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
213 |
Q |
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| T |
3325 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
3226 |
T |
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| Q |
214 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaataccagaaagaagaagaaatgttt |
290 |
Q |
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| T |
3225 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgttt |
3149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 33522105 - 33521947
Alignment:
| Q |
77 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtga-----gaaacaagggactcaagct |
171 |
Q |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaaaacaagggaccgatgtt |
33522006 |
T |
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| Q |
172 |
acatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctga |
230 |
Q |
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| T |
33522005 |
acatggcttgtcgatgctgtggaacacggtgctgtaatactaacaagatgcaaagctga |
33521947 |
T |
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