View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21497_high_1 (Length: 455)
Name: NF21497_high_1
Description: NF21497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21497_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 41823153 - 41823401
Alignment:
| Q |
13 |
gagagaagaaaggaataacatgagaaaggtgtgatgctagagtgaataaatagaaaacagtttagtctagaacataatcagaaacgtctttaaggttgca |
112 |
Q |
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| T |
41823153 |
gagagaagaaaggaataacatgagaaaggtgtgatgctagagtgaataaatagaaaacagtttagtctagaacataatcagaaacgtctttaaggttgca |
41823252 |
T |
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| Q |
113 |
acaaaacaaaacaacattggacttgtttgagacgaaaaaggtgtccacaaatatgttaatgtggggcctaatttccactatagtcttagactgctacgac |
212 |
Q |
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| T |
41823253 |
acaaaacaaaacaacattggacttgtttgagacgaaaaaggtgtccacaaatatgttaatgtggggcctaatttccactatagtcttagactgctacgac |
41823352 |
T |
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| Q |
213 |
tagtacctaaaatttcgtgaagatgtttggccttcacccaatcacagtg |
261 |
Q |
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| T |
41823353 |
tagtacctaaaatttcgtgaagatgtttggccttcacccaatcacagtg |
41823401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 41823445 - 41823585
Alignment:
| Q |
303 |
cgtatcttcatttacttgttctgtgccatgaattgcta---gttcaaaatgtatgtggtgacggtatatttgaatattttttgacgtcaatagtttagaa |
399 |
Q |
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| T |
41823445 |
cgtatcttcatttacttcttctgtgccatgaattgctactagttcaaaatgtatgtggtgacggtatatttgaatattttttgacgtcaaaagtttagaa |
41823544 |
T |
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| Q |
400 |
gtgtcattgcatggttatgagagattgacacgtgtatgaca |
440 |
Q |
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| T |
41823545 |
gtgtcattgcatggttatgagagattgacacgtgtatgaca |
41823585 |
T |
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