View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21497_high_3 (Length: 397)
Name: NF21497_high_3
Description: NF21497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21497_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 134 - 379
Target Start/End: Original strand, 17662294 - 17662536
Alignment:
| Q |
134 |
aaatgagaataagggagtgatgaaaataaaccaacggtgacaaagtttaagtttgatgaaagaaagagaaagtaagataaaccctagctattttttcgga |
233 |
Q |
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| T |
17662294 |
aaatgagaataagggagtgatgaaaataaactaaaggtaacaaagttgaagtttgatgaaagaaagagaaagtaagataaaccctagctatttcttcgga |
17662393 |
T |
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| Q |
234 |
aaagccctaactattattaccttataaacctcgcgcgttctctttgctgcttcacatccacgctttccatcgctttgtttcttcaaaccctattttctca |
333 |
Q |
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| T |
17662394 |
aaagtcctaactattact---ttataaacctcgcgcgttctctttcctgcttcacatccacgctttccatcgctttgttgcttcaaaccctattttcaca |
17662490 |
T |
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| Q |
334 |
gttcaattcctctgttacatcgatcacaacatcttcatgaagagtt |
379 |
Q |
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| T |
17662491 |
gttcaattcctctgctacatcgatcacaacatcatcatgatgagtt |
17662536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 119 - 359
Target Start/End: Complemental strand, 17701803 - 17701567
Alignment:
| Q |
119 |
tagaataaaacaaggaaatgagaataagggagtgatgaaaataaaccaacggtgacaaagtttaagtttgatgaaagaaagagaaagtaagataaaccct |
218 |
Q |
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| T |
17701803 |
tagaataaaacaaggaaatgagaataagggagtgatgaaaataaaccaacggtgacaaagttgaagtttgatgaaagaaagataaattaagataaaccct |
17701704 |
T |
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| Q |
219 |
agctattttttcggaaaagccctaactattattaccttataaacctcgcgcgttctctttgctgcttcacatccacgctttccatcgctttgtttcttca |
318 |
Q |
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| T |
17701703 |
agctatttcttcggaaaa-ccctagc---tattgctttataaacctcgcgcgatctgtttggtgcttcacatccacgctttccatcgctttgtttcttca |
17701608 |
T |
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| Q |
319 |
aaccctattttctcagttcaattcctctgttacatcgatca |
359 |
Q |
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| T |
17701607 |
aaccctattttctcagttcaattccactgctacatcgatca |
17701567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 17661762 - 17661803
Alignment:
| Q |
32 |
aaaaaattgcaatgaacaaatatttgtttactaaaaatatat |
73 |
Q |
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| T |
17661762 |
aaaaaattacaatgaacaaatattagtttactaaaaatatat |
17661803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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