View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21497_low_2 (Length: 408)

Name: NF21497_low_2
Description: NF21497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21497_low_2
NF21497_low_2
[»] chr2 (1 HSPs)
chr2 (19-397)||(6687581-6687959)
[»] chr3 (7 HSPs)
chr3 (49-394)||(37418697-37419045)
chr3 (242-397)||(53068814-53068969)
chr3 (242-397)||(53059588-53059743)
chr3 (244-350)||(53062666-53062772)
chr3 (34-156)||(53059413-53059535)
chr3 (34-156)||(53068639-53068761)
chr3 (112-156)||(53062570-53062614)
[»] chr4 (1 HSPs)
chr4 (242-394)||(34036034-34036186)
[»] chr7 (2 HSPs)
chr7 (300-389)||(31014240-31014328)
chr7 (115-157)||(31014179-31014221)
[»] chr1 (1 HSPs)
chr1 (67-143)||(48828339-48828415)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 6687581 - 6687959
Alignment:
Q  19 ctagtaatccgacacgacattcctcaaataaataatcctatttgacacctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6687581 ctagtaatccgacacgacattcctcaaataaataatcctatttgacacctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatca 6687680  T
Q  119 tcgactttctcttttcctttcccattctcgaggaattgatatcgaacgatatatttattatagaggaattgctggtcaataatatattcaacattccttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6687681 tcgactttctcttttcctttcccattctcgaggaattgatatcgaacgatatatttattatagaggaattgctggtcaataatatattcaacattccttg 6687780  T
Q  219 gaaaaaagttgagccaataaaaacagacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctt 318  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6687781 ggaaaaagttgagccaataaaaacagacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctt 6687880  T
Q  319 tccaaggcactcagtctcagtctaaagatggtaagtaagagtttgtttgattttacaaaacaaatcacaatatgatgat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6687881 tccaaggcactcagtctcagtctaaagatggtaagtaagagtttgtttgattttacaaaacaaatcacaatatgatgat 6687959  T

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Target: chr3 (Bit Score: 151; Significance: 9e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 49 - 394
Target Start/End: Original strand, 37418697 - 37419045
Alignment:
Q  49 aataatcctatttgacacctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatcatcgactttctcttttcctttcccattctcg 148  Q
    |||||| |||||| ||  |||||||||||||||||||||  ||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||| |    
T  37418697 aataatactatttcacggctcaaaactctccacttagattgtgttcatttcatgactcgtacgcttatcattgactttctcttttcctttcccattctag 37418796  T
Q  149 aggaattga---tatcgaacgatatatttattatagaggaattgctggtcaataatatattcaacattccttggaaaaaagttgagccaataaaaacaga 245  Q
    ||||||||    ||   || ||| |||||||||||||||||  | | || ||| ||  ||| ||| || |||  || || | ||  ||||||||| ||||    
T  37418797 aggaattgcgggtaaataatgatctatttattatagaggaaacgttagtaaatcatccatttaaccttacttataataatgctgttccaataaaagcaga 37418896  T
Q  246 caagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctttccaaggcactcagtctcagtctaaag 345  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  37418897 caagatcaaatgcttgcccaatttggtgacagccaagctttatgatagcgaacctattcctctcttcttgctttccagtgcagtcagtctcagtataaag 37418996  T
Q  346 atggtaagtaagagtttgtttgattttacaaaacaaatcacaatatgat 394  Q
    ||||| ||||  ||||||||| |||||||||||||||||||||||||||    
T  37418997 atggtcagtactagtttgtttcattttacaaaacaaatcacaatatgat 37419045  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 242 - 397
Target Start/End: Original strand, 53068814 - 53068969
Alignment:
Q  242 cagacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctttccaaggcactcagtctcagtct 341  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||  ||||  ||||||||| |    
T  53068814 cagacaagatcaaatgcttgcccaatttggtgacatccaagctttctgataacaaacctattcctctcttcctgctttccagagcacgtagtctcagtat 53068913  T
Q  342 aaagatggtaagtaagagtttgtttgattttacaaaacaaatcacaatatgatgat 397  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  53068914 aaagatggtaagtaatagtttgtttcattttacaaaacaaatcacaatatcatgat 53068969  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 397
Target Start/End: Original strand, 53059588 - 53059743
Alignment:
Q  242 cagacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctttccaaggcactcagtctcagtct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||  ||||||||| |    
T  53059588 cagacaagatcaaatgcttgcccaatttggtgacagccaagctttctgataacaaacctattcctctcttcctgctttccagggcacggagtctcagtat 53059687  T
Q  342 aaagatggtaagtaagagtttgtttgattttacaaaacaaatcacaatatgatgat 397  Q
    ||   |||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  53059688 aactctggtaagtaagagtttgtttcattttacaaaacaattcacaatatcatgat 53059743  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 350
Target Start/End: Original strand, 53062666 - 53062772
Alignment:
Q  244 gacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctttccaaggcactcagtctcagtctaa 343  Q
    ||||||||||||  |||||||||||| |||||||||||||||| ||||| | || |||||||| |||||||||||||||||||||  ||||||||| |||    
T  53062666 gacaagatcaaacacttgcccaatttagtgacagccaagctttctgatagcaaagctattcctttcttcttgctttccaaggcacagagtctcagtataa 53062765  T
Q  344 agatggt 350  Q
    || ||||    
T  53062766 agctggt 53062772  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 53059413 - 53059535
Alignment:
Q  34 gacattcctcaaataaataatcctatttgacacctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatcatcgactttctctttt 133  Q
    ||||||||||||||||||||| |||||| ||  ||||||||||||||||| ||||  |||  |||||  |||| || ||| ||||||||||||||||| |    
T  53059413 gacattcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgt 53059512  T
Q  134 cctttcccattctcgaggaattg 156  Q
     |||||||||||| |||||||||    
T  53059513 tctttcccattctggaggaattg 53059535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 53068639 - 53068761
Alignment:
Q  34 gacattcctcaaataaataatcctatttgacacctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatcatcgactttctctttt 133  Q
    ||||||||||||||||||| | |||||| ||  ||||||||||||||||| |||  ||||  |||||  |||| ||||||  ||||||||||||| || |    
T  53068639 gacattcctcaaataaatagtactatttcactactcaaaactctccacttggatggtgtttatttcaacactcatacacagctcatcgactttctattat 53068738  T
Q  134 cctttcccattctcgaggaattg 156  Q
    |||||||| |||| |||||||||    
T  53068739 cctttccccttctagaggaattg 53068761  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 53062570 - 53062614
Alignment:
Q  112 catatcatcgactttctcttttcctttcccattctcgaggaattg 156  Q
    ||||||||| |||| ||||| |||||||||||||| |||||||||    
T  53062570 catatcatcaacttgctcttatcctttcccattctagaggaattg 53062614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 242 - 394
Target Start/End: Original strand, 34036034 - 34036186
Alignment:
Q  242 cagacaagatcaaatgcttgcccaatttggtgacagccaagctttgtgataacgaacctattcctctcttcttgctttccaaggcactcagtctcagtct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  || | || |||||||||| |||||||||||||||||||  || |||||| |    
T  34036034 cagacaagatcaaatgcttgcccaatttggtgacagccaagctttctagtagcaaagctattcctcttttcttgctttccaaggcacgaaggctcagtat 34036133  T
Q  342 aaagatggtaagtaagagtttgtttgattttacaaaacaaatcacaatatgat 394  Q
    |||| |||||  ||||||||||||||||||| |||||||||| ||||||||||    
T  34036134 aaagctggtatttaagagtttgtttgattttgcaaaacaaattacaatatgat 34036186  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 31014240 - 31014328
Alignment:
Q  300 tattcctctcttcttgctttccaaggcactcagtctcagtctaaagatggtaagtaagagtttgtttgattttacaaaacaaatcacaat 389  Q
    ||||||||| |||||||||||||||||||  || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31014240 tattcctcttttcttgctttccaaggcaca-aggctcagtataaagctggtaagtaagagtttgtttgattttacaaaacaaatcacaat 31014328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 31014179 - 31014221
Alignment:
Q  115 atcatcgactttctcttttcctttcccattctcgaggaattga 157  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  31014179 atcatcgactttctcttgtcctttcccattctagaggaattga 31014221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 48828339 - 48828415
Alignment:
Q  67 ctcaaaactctccacttagatactgttcgtttcatgactcgtacacatatcatcgactttctcttttcctttcccat 143  Q
    ||||||||||| ||||| |||| ||||| |||||| || | |||||| |||||| ||||||||||||||||||||||    
T  48828339 ctcaaaactcttcacttggataatgttcttttcataacccatacacacatcatcaactttctcttttcctttcccat 48828415  T

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