View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21497_low_6 (Length: 339)
Name: NF21497_low_6
Description: NF21497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21497_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 7296085 - 7296422
Alignment:
| Q |
8 |
ccaagaatattacaccacaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcacaaaata |
107 |
Q |
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| T |
7296085 |
ccaacaatattacaccacaaacaaacaacggcaaccctataataggccacaaatttaacctctctttctaaaatcatcttcaacaaaatgtcaaaaaata |
7296184 |
T |
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| Q |
108 |
gaaaattctacgaaggtggttcatgtttgtattacgagtacttttcgaaccccttcctttatatgttattttaggtga---gtgttgttgttgtttatat |
204 |
Q |
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| T |
7296185 |
gaaaattctacgaaggtggttcatgtttgtattacgagtgcttttcgaaccccttcctttatatgttattttaggtgattgttgttgttgttgtttatat |
7296284 |
T |
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| Q |
205 |
ttaggtcgaatttccctaatacttctcctcggttaatgagtcaagtattaactatatgtcttt---nnnnnnnnnnnnnnncttctatatatatcatttt |
301 |
Q |
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| T |
7296285 |
ttaggtcgaatatccttgatacttctcctcagttgatgagtcaagtattaactatatttctttaaaaaaaaaaaaaaaaatcttctatatatatcatttt |
7296384 |
T |
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| Q |
302 |
atcattcaaaataaagaacaaattaattagaacataaa |
339 |
Q |
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| T |
7296385 |
gtcattcaaaataaagaacaaagtaattagaacataaa |
7296422 |
T |
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