View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21497_low_9 (Length: 250)
Name: NF21497_low_9
Description: NF21497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21497_low_9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 7023858 - 7023615
Alignment:
| Q |
7 |
tccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgcta |
106 |
Q |
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| T |
7023858 |
tccaaaaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttgatattccttgcta |
7023759 |
T |
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| Q |
107 |
ggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
206 |
Q |
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| T |
7023758 |
ggctttcccatatggctttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
7023659 |
T |
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| Q |
207 |
ctcacggtactccatttcattatgcttatgtttagcaaaggcat |
250 |
Q |
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| T |
7023658 |
ctcacggtactccatttcattatgcttatgtttagcaaaggcat |
7023615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 7031247 - 7031006
Alignment:
| Q |
7 |
tccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgcta |
106 |
Q |
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| T |
7031247 |
tccaataatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcct |
7031148 |
T |
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| Q |
107 |
ggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
206 |
Q |
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| T |
7031147 |
ggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatag |
7031048 |
T |
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| Q |
207 |
ctcacggtactccatttcattatgcttatgtttagcaaaggc |
248 |
Q |
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| T |
7031047 |
ctcatagtactccatttcgagatgctcatgtttagtaaaggc |
7031006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 7036959 - 7036786
Alignment:
| Q |
4 |
atgtccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttg |
103 |
Q |
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| T |
7036959 |
atgtctaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcatggacattttcaatctgctctattttaagattccttg |
7036860 |
T |
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| Q |
104 |
ctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacacct |
177 |
Q |
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| T |
7036859 |
attgggtttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacct |
7036786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 7075003 - 7075249
Alignment:
| Q |
4 |
atgtccaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttg |
103 |
Q |
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||||| |||||||| ||||||||| |||||||||||||||||| ||||||||| | ||||| |||||| || | ||||| ||||||| | |||||||| |
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| T |
7075003 |
atgtctaagaatatgatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatctgctctattttaagattccttg |
7075102 |
T |
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| Q |
104 |
ctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccga |
203 |
Q |
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| T |
7075103 |
attggctttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatccaccattttctttga |
7075202 |
T |
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| Q |
204 |
tagctcacggtactccatttcattatgcttatgtttagcaaaggcat |
250 |
Q |
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||||| | ||||||||||||| |||||| |||||| |||||||| |
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| T |
7075203 |
tagcttatagtactccatttcaagatgcttttgtttattaaaggcat |
7075249 |
T |
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