View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_high_5 (Length: 405)
Name: NF21498_high_5
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 7544724 - 7545115
Alignment:
| Q |
1 |
actacaaagttcaccacctttgctcggctccttgcatatttgcagcagaagtagttttatgtcatccagtgttgtagacccacaatttgacggccacaca |
100 |
Q |
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| T |
7544724 |
actacaaagttcaccacctttgctcggctccttgcatatttgcagcagaagtagttttatgtcatccagtgttgtagacccacaatttgacggccacaca |
7544823 |
T |
|
| Q |
101 |
tgcacacagttatcttctgattgtgacgattccacgacatacctatccttttacatacaagcattggactttctatgccaacctcttgctaaaacaataa |
200 |
Q |
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| T |
7544824 |
tgcacacagtcatcttctgattgtgatgattccaccacatacctatcctcttacatacaagcattggactttctatgccaaccgcttgctaaaacaataa |
7544923 |
T |
|
| Q |
201 |
attcagaaaggaaacagttagtaaccggaaaggacgatgcttttgctatgactatgctttcaattgttaaagacgtatttcatgcgttttgccagtttat |
300 |
Q |
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| T |
7544924 |
attcagaaaggaaacagttagtaactggaaaggacgatgcttctgctatgactatgctttcaattgttgaagacgtatttcatgcgttttgccaatttac |
7545023 |
T |
|
| Q |
301 |
tcttcatagtccgaggtatattcagtgaatatctaaattattttggtcaagtaga--ttttattcatatttgacctaattgtctttctatat |
390 |
Q |
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| T |
7545024 |
tcttcatagtccgaggtatattcagtgaatatctaaattattttggtcaagtagatttttttttcatatttggcctaattgtctttctatat |
7545115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 1126675 - 1127054
Alignment:
| Q |
8 |
agttcaccacctttgctcggctccttgcatatttgcagcagaagtagttttatgtcatccagtgttgtagacccacaatttgacggccacacatgcacac |
107 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| |||| | ||||||||||||||| ||||| ||||||||| || || |||||||||| |
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| T |
1126675 |
agttcaccacctttgctcggttccttgcatatatgcagcagaagaagttgtttgtcatccagtgttgaagaccaacaatttgatggtcatacatgcacac |
1126774 |
T |
|
| Q |
108 |
agttatcttctgattgtgacgattccacgacatacctatccttttacatacaagcattggactttctatgccaacctcttgctaaaacaataaattcaga |
207 |
Q |
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||| | |||||||||| | | ||| | ||| |||||||| ||||||| | |||||||||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
1126775 |
agtcagtttctgattgtaaggcttcaatgacttacctatcattttacacagaagcattggactttatatgccaaccacttgctagttcaataaattcaga |
1126874 |
T |
|
| Q |
208 |
aaggaaacagttagtaaccggaaaggacgatgcttttgctatgactatgctttcaattgttaaagacgtatttcatgcgttttgccagtttattcttcat |
307 |
Q |
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||||||| | || ||||| |||||||| ||||||| |||| ||||| ||||||| | |||| ||| | ||||||||| |||| || ||| ||||| || |
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| T |
1126875 |
aaggaaagaatttgtaactggaaaggatgatgcttctgctttgactgtgctttccactgttggagatgcatttcatgctctttgtcaatttgttctttat |
1126974 |
T |
|
| Q |
308 |
agtccgaggtatattcagtgaatatctaaattattttggtcaagtagattttattcatatttgacctaattgtctttctat |
388 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| ||||||| ||| || || |||| |||| ||||||||||| |
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| T |
1126975 |
gatccaaggtatattcagtgaatatctaaattattttggtgaagtagagttt-ttaatgtttggcctatatgtctttctat |
1127054 |
T |
|
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