View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_high_7 (Length: 335)
Name: NF21498_high_7
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 111 - 320
Target Start/End: Complemental strand, 28946333 - 28946124
Alignment:
| Q |
111 |
gtggctgaaatttgtgattcaagtaatggggatttggagggtgtcaaggagaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgagga |
210 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
28946333 |
gtggctaaaatttgtgattcaagtaatggagatttggagggtgtgaaggagaaggtggaggaagtaaagaaaaatgtgagggtgacaaggaatttgagga |
28946234 |
T |
|
| Q |
211 |
ataagataaataaaatgggggtttctgaattgagtgttggggatttggttggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946233 |
ataagataaataaaatgggggtttctgaattgagtgttggggatttggatggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaa |
28946134 |
T |
|
| Q |
311 |
tgtgaagaat |
320 |
Q |
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|||||||||| |
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| T |
28946133 |
tgtgaagaat |
28946124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 28946435 - 28946339
Alignment:
| Q |
120 |
atttgtgattcaagtaatggggatttggagggtgtcaaggagaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataaga |
216 |
Q |
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| T |
28946435 |
atttgtgattccagtaatggtaatttggatgatgtgaaggagaaagtagaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaataaga |
28946339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28946443 - 28946402
Alignment:
| Q |
1 |
ctgttgagatttgtgattccagtaatggtaatttggatgatg |
42 |
Q |
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| T |
28946443 |
ctgttgagatttgtgattccagtaatggtaatttggatgatg |
28946402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 111 - 320
Target Start/End: Complemental strand, 34823696 - 34823487
Alignment:
| Q |
111 |
gtggctgaaatttgtgattcaagtaatggggatttggagggtgtcaaggagaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgagga |
210 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
34823696 |
gtggctaaaatttgtgattcaagtaatggagatttggagggtgtaaaggagaaggtggaggaagtaaagaaaaatgtgagggtgacaaggaatttgagga |
34823597 |
T |
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| Q |
211 |
ataagataaataaaatgggggtttctgaattgagtgttggggatttggttggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823596 |
ataagataaataaaatgggggtttctgaattgagtattggggatttggatggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaa |
34823497 |
T |
|
| Q |
311 |
tgtgaagaat |
320 |
Q |
| |
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|||||||||| |
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|
| T |
34823496 |
tgtgaagaat |
34823487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 34823798 - 34823702
Alignment:
| Q |
120 |
atttgtgattcaagtaatggggatttggagggtgtcaaggagaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataaga |
216 |
Q |
| |
|
||||||||||| |||||||| ||||||| | ||| |||||||| || || |||||||||||||||||||||||| ||||||||| || |||||||| |
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| T |
34823798 |
atttgtgattccagtaatggtaatttggatgatgtgaaggagaaagtagaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaataaga |
34823702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34823806 - 34823765
Alignment:
| Q |
1 |
ctgttgagatttgtgattccagtaatggtaatttggatgatg |
42 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823806 |
ctgttgagatttgtgattccagtaatggtaatttggatgatg |
34823765 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 42232340 - 42232487
Alignment:
| Q |
121 |
tttgtgattcaagtaatggggatttggagggtgtcaaggagaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataagataaa |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
42232340 |
tttgtgattcgagtaatggggatttggagggtgtcaaagagaaggtggaggaagtgaagaagaatgtgagggtgacaaggaatttgaggaataagatgaa |
42232439 |
T |
|
| Q |
221 |
taaaatgggggtttctgaattgagtgttggggatttggttggtgtgaa |
268 |
Q |
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|||||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
42232440 |
taaaatggggacttctgaattgagtgttggggatttcgatggtgtgaa |
42232487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 42232273 - 42232391
Alignment:
| Q |
165 |
gtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtgttggggatttggttggtg |
264 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||| || ||| |||| |||| | | | ||||| ||| | |||| ||||||||||| |||| |
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| T |
42232273 |
gtggaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaacaagaagaatacagttgaggtttgtgattcgagtaatggggatttggagggtg |
42232372 |
T |
|
| Q |
265 |
tgaaagagaaggtggagga |
283 |
Q |
| |
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| T |
42232373 |
tcaaagagaaggtggagga |
42232391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 42232487 - 42232527
Alignment:
| Q |
280 |
aggagccgaggagtgtgaggatgacaaggaatgtgaagaat |
320 |
Q |
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|||||||||||| |||||||||||||||||| |||||||| |
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| T |
42232487 |
aggagccgaggaatgtgaggatgacaaggaacatgaagaat |
42232527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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