View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_low_1 (Length: 625)
Name: NF21498_low_1
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 121 - 613
Target Start/End: Complemental strand, 43329748 - 43329262
Alignment:
| Q |
121 |
tcttatatatatcaaaaattacttatacatatgaatagaaggcaagcggggaacaacatacatttcc--gttagaccttttcggattgttattgttggaa |
218 |
Q |
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| T |
43329748 |
tcttatatatatcaaaaattacttatacatattaatagaaggcaagcggggaacaacatacattcccccgttaagccttttcggattgttattgttggaa |
43329649 |
T |
|
| Q |
219 |
atattgttcgaaacataaaataagttccttnnnnnnnnnnngtccgttggagatgctcatatagcctggatctctatatcgcttaaagatgcttaagaaa |
318 |
Q |
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| T |
43329648 |
atattgttcgaaacataaaataggttccttaaaaaaaagaagtccgttggagatgctcatatagcctggatctctatatcgcttaaagatgcttaagaaa |
43329549 |
T |
|
| Q |
319 |
tattttgattcccacggaatccatgttttgcttaggttgggggattttcttagaatataaaactacaataagtctccaaggatcatatgaatgaatataa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43329548 |
tattttgattcccacggaatccatgttttgcttaggtggggggattttcttagaatataaaactacaataagtctccaaggatcatatgaat----ataa |
43329453 |
T |
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| Q |
419 |
acaactagctagctaggattatgaattggaccttggaaacaacaaggaaatgatcttaaccacatgcggggacgaacttcaaaattcaacactagcttgc |
518 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43329452 |
acaactagctag----gattatgaattggaccttggaaacaacaaggaaatgatcttaaccacatgcggggaggaacttcaaaattcaacactagcttgc |
43329357 |
T |
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| Q |
519 |
cttggatatagaccttattattataaaaatgttattaagtgcataaggtggcactatatatcaatgtgattggttctcctttattgtctctgctc |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43329356 |
cttggatatagaccttattattataaaaatgttattaagtgcataaggtggcactatatatcaatgtgattggttctcctttattgtctctgctc |
43329262 |
T |
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