View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_low_2 (Length: 503)
Name: NF21498_low_2
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 21181527 - 21181044
Alignment:
| Q |
11 |
cgttcactgtcaccatcctcttgttgtggcacaatcttgtcacattttggtaccctatctgcataaataacctcatatgttacaagcagagtaataaaag |
110 |
Q |
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| T |
21181527 |
cgttcactgtcaccatcctcttgttgtggcacaatcttgtcacattttggtaccctatctgcataaataacctcatatgttacaagcaaagtaataaaag |
21181428 |
T |
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| Q |
111 |
aaacaaacacagctttttatacaatcgaaaagtgtaacaaatatttcaagtcagtacatcaaattggtagtgtctggtagtgacagccagtgcaaactga |
210 |
Q |
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| T |
21181427 |
aaacaaacacagctttttatacaatcgaaaagtgtaacaaatatttcaagtcagtacatcaaattggtagtgtctggtagtgccggccagtgcaaactca |
21181328 |
T |
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| Q |
211 |
aatgcgcaaaaattaatcaatgacaaaaacaacgttgcgattttaagcgatnnnnnnnttgaaacagccatttt---tctctgaatgagtaaaagttgct |
307 |
Q |
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| T |
21181327 |
aatgcgcaaaaattaatcaatgacaaaaacaacgttgcgattttaagcgatgaaaaaatggtaacagccattttttctctctgaatgagtaaga-ttgct |
21181229 |
T |
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| Q |
308 |
cttgtaa---gttctaacttatattttgagtttgaac--tatgttgatggaatgtgacaaaaatgttaatgtatatatagaagaatgaaagaaagtggtt |
402 |
Q |
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| T |
21181228 |
cttataagttgttctagcttttattttgagtttgaactgtgtgttgatggaatgtgacaaaaatgttaatgtatatatagaagaatgaaagaaagtggtt |
21181129 |
T |
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| Q |
403 |
gtttgatttgattgataaaaatattatatgattcaaagagaagcagaactgaacattactgtcattgaacaagactagtagttag |
487 |
Q |
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| T |
21181128 |
gtttgatttgattgataaaaatattatatgattcaaagagaagcagaactaaacattactgtcattgaacaagactagtagttag |
21181044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 21204162 - 21204101
Alignment:
| Q |
13 |
ttcactgtcaccatcctcttgttgtggcacaatcttgtcacattttggtaccctatctgcat |
74 |
Q |
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| T |
21204162 |
ttcactgtcaccatgctcttgctatggcacagccttgtcacattttggtaccttatctgcat |
21204101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 21204005 - 21203929
Alignment:
| Q |
163 |
agtacatcaaattggtagtgtctggtagtgacagccagtgcaaactgaaatgcgcaaaaattaatcaatgacaaaaa |
239 |
Q |
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| T |
21204005 |
agtacatcaaaatggtagtgtctggttatgcctgccaatgcaagctcaaatgtacaaaaattgatcaatgataaaaa |
21203929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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